Sequence
atgc intronic sequence ATGC exonic sequenceTTCGGTGGATAAACTATCTTCGCCCAGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATCGTTCAACTTCATGGCATGCTTGGCAACAGgtaccacattgctccatttgcttatttttttcaacatgtacacaatacacatgcatatcaccaaacctaaacccaaaccctcttggtcctgaaggcctat...
Basic information
species | Glycine max |
transcript | GLYMA20G29730.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298188693|gb|HO035386.1|HO035386EST: AGTGAAGAAGAAAGTACAATCGTTCAACTTCATGGCATGCTTGGCAACAG GTGGGCTTCTATAGCATCTCAACTACCTGGAAGAACAGACAATGAGATTAA
genomic: AGTGAAGAAGAAAGTACAATCGTTCAACTTCATGGCATGCTTGGCAACAGgtaccacatt ... attcacttagGTGGGCTTCTATAGCATCTCAACTACCTGGAAGAACAGACAATGAGATTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCGGTGGATAAACTATCTTCGCCCAGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATCGTTCAACTTCATGGCATGCTTGGCAACAGgtaccacattgctccatttgcttatttttttcaacatgtacacaatacacatgcatatcaccaaacctaaacccaaaccctcttggtcctgaaggcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt