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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGgtagaatcaatgcagtgtgtgctatatttctgccgttaatttatcaacttgttgaggttctgcagtaaagcatatgctttactttgtaaatactgaaagc...

Basic information

species Glycine max
transcript GLYMA20G29680.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29680.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g58630.2 (Oryza sativa), 5'ss of exon 10
GCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGgtagaatcaatgca----gtgtgtgctatatttctgccgttaatttatcaacttgttgaggttctgcagtaaagcatatgctttactttgtaaatactgaaagc------------------------------------------------------------------------
 |||||| || | |||||||| ||||||||||| ||||| || ||||| ||||| ||||| |||||||| || || ||||| |||    | ||||| |||||| ||  | ||         |||  |  | |  ||     |  || |  |  | |        | | | |||     |  ||    ||   |     | |||                                                                         
TCATGCAAATAGTGAGTACTGCCAGATTGTTACAGGACCAAACATGGGAGGAAAGAGTTGCTATATTCGTCAAGTTGCTCTAATTACATTGATGGCCCAGgtataaatattgtctcacacttgtagttcactcatgttaacatgttctggatgtataacatagttactgcaaacttagttgttgggcttaggacctgaggaagtaagggtttactttgttgttatcttaccctgactctgagattatcctaacacttggtacactgatttccttag

upper sequence: GLYMA20G29680.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv16s0100g01310.t01 (Vitis vinifera), 5'ss of exon 10
GCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGgtagaatcaatgcagtgtgtgctatatttctgccgttaatttatcaacttgttgaggttctgcagtaaagcatatgctttactttgtaaatactgaaagc---
||||||||| |||||||||||| |||||||||||||||| || ||||| ||||| ||||| ||||||||||| |||||||| |||| ||| ||||| ||||||||| ||  ||| |      ||| |        |  |  | | |  |  ||  |   |||| |    |  |    | | || |  ||   |||| |     
GCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTGGAAAGAGTTGCTATATTCGCCAAGTGGCTCTCATTGCTATCATGGCCCAGgtagaacca--gcacttgacattatttgctcatgatccacattttatttgcttatgaccctgctgctt-gttttccttgtgctgttaaacccctgacatacgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000234|gb|BI321048.1|BI321048
EST:     GAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAG                         CATCATCAGCAAAATTGCATGTCCTGGATAGGATCTACACCCGGATGGGTG
genomic: GAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGgtagaatcaa ... tttgtaccagCATCATCAGCAAAATTGCATGTCCTGGATAGGATCTACACCCGGATGGGTG