Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19053902|gb|BM732569.1|BM732569EST: ATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTAT GGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTT
genomic: ATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATgtaatctaat ... tgacttgtagGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTT
EST:
gi|15337549|gb|BI498205.1|BI498205EST: ATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTAT GGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTT
genomic: ATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATgtaatctaat ... tgacttgtagGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTT
EST:
gi|254327337|gb|GR836946.1|GR836946EST: ATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTAT GGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTT
genomic: ATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATgtaatctaat ... tgacttgtagGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcttttctctttttacatttttctgatttttcttaattttgcttgacttgtagGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTTCGAAGAGGCGAAAAGCGTCTTCTCTGCGAAATCCAGCGACGGAAGATCC
ttttgctt CT-rich tract
tttttacatttttctg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatctaattattcttctctatcaattcctttcttttctctttttacatttttctgatttttcttaattttgcttgacttgtagGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTTCGAAGAGGCGAAAAGCGTCTTCTCTGCGAAATCCAGCGACGGAAGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA