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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacattgtaagactgtaaataggaatttttgctcaaactttcacttgcttggtaacgattaacattaatacaaatttgaatttttttcccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA

Basic information

species Glycine max
transcript GLYMA20G29590.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29590.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
gtaagacattgtaagactgtaaataggaatt-tttgctcaaactttcact-----------tgcttggtaacgattaacattaatacaaatttgaatttttttcccct---agGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA
||| ||   || |      |         || ||||||      |||| |           || || ||  |  |       | ||| ||||  ||| |   |  | |   |||||||| ||||||||| |||| || |||||||| |||||||||||||||| |||||||||||||| ||||||| | | ||| ||    ||  ||| ||| 
gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacttgcttggtaacgattaacattaatacaaatttgaatttttttcccctagGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA
                                         tttttttcccct  CT-rich tract
             taacgattaacattaa  TA-rich tract