1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatttgctagtcaggaaacttaattcagtttctctgttggtcaagttttactttacaaattaatggacctaacattttcatttgtcaaactaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTCGTCTCTATTTATCAGAGACCACATCTCTGTTGGTGCTTCTGGTGCCCT
species | Glycine max |
transcript | GLYMA20G29570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTA TTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTEST: gi|209725217|gb|BW672692.1|BW672692
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTAgtatgttttt ... ctaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTA TTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTEST: gi|192294769|gb|FG986618.1|FG986618
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTAgtatgttttt ... ctaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTA TTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTEST: gi|213599367|gb|DB970343.1|DB970343
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTAgtatgttttt ... ctaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTA TTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTEST: gi|209713526|gb|BW681527.1|BW681527
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTAgtatgttttt ... ctaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTA TTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTEST: gi|21675882|gb|BQ628233.1|BQ628233
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTAgtatgttttt ... ctaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
EST: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTA TTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
genomic: GTTGAGTCTGGTCTTCATTGGCATTCGCCTTGAACAGCAATTCGGATTTAgtatgttttt ... ctaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGT
gttttactttacaaattaatggacctaacattttcatttgtcaaactaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTCGTCTCTATTTATCAGAGACCACATCTCTGTTGGTGCTTCTGGTGCCCT
aactaat putative branch site (score: 2)
actttacaaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttgctagtcaggaaacttaattcagtttctctgttggtcaagttttactttacaaattaatggacctaacattttcatttgtcaaactaatggcagTTAAGATTGGAATCATATACTTGGTGTCCGGGTTTGGTGGAAGTGTACTGTCGTCTCTATTTATCAGAGACCACATCTCTGTTGGTGCTTCTGGTGCCCT
- - ttgctag
- - - - - - - - - - - - - - - - -tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaaca