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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaaagttttcaattctgttcatttctgggtcttggggatggtgtacctctcttaattctccctacttcaattgcatttttctctcttaaaacttgcagAGATGTAGTTCCAATGCCAATTCTAGGAACGTTGACTCAGAACGAGCCAG

Basic information

species Glycine max
transcript GLYMA20G29550.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13479292|gb|BG508635.1|BG508635
EST:     ACCCACCTCGTGGCTTCAGTACAAAATTTGATGGATCTTTTATCCTTAAG                         AGATGTAGTTCCAATGCCAATTCTAGGAACGTTGACTCAAAACGAGCCAG
genomic: ACCCACCTCGTGGCTTCAGTACAAAATTTGATGGATCTTCTATCCTTAAGgtacacgatt ... aaacttgcagAGATGTAGTTCCAATGCCAATTCTAGGAACGTTGACTCAGAACGAGCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctctcttaattctccctacttcaattgcatttttctctcttaaaacttgcagAGATGTAGTTCCAATGCCAATTCTAGGAACGTTGACTCAGAACGAGCCAG
      tcttaat  putative branch site (score: 3)
                                tttttctctcttaa  putative PPT
                                          ttaaaactt  TA-rich tract