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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGGCATGGAAGAGCCCCTTGAAATACCCATAATAAATGACCTTACTATGATTTTGGGCTCTATATCTCAGgtgatgtgaatcaataacaaacttggtattttttttctctccttaatctgttttcttgaatgacgttttggatggcaatttgcagtccaaggcagcagga...

Basic information

species Glycine max
transcript GLYMA20G29480.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29480.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 3
ATATGTGGCATGGAAGAGCCCCTTGAAATACCCATAATAAATGACCTTACTATGATTTTGGGCTCTATATCTCAGgtgatgtgaatcaataacaaacttggtattttttttctctccttaatctgttttcttgaatgacgttttggatggcaatttgcagtccaaggcagcagga----
 ||||||||||||||||| | || ||||| |||||||| ||||| || || ||| | || || || ||||||||||| |||||    | | ||||       | |   |        ||||  |||  |     |  | | |  ||||  |||||||  |     |     |  |    
GTATGTGGCATGGAAGAGGCTCTAGAAATGCCCATAATCAATGATCTAACCATGGTATTAGGTTCCATATCTCAGgtaatgtgctcaacttacaattcacccactccctcaaaa---ttaaagtgtactgcatgaaaatgcta-ggataccaatttgatgctatcgaatttacaatctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481671|gb|AW200942.1|AW200942
EST:     AAATACCCATAATAAATGACCTTACTATGATTTTGGGCTCTATATCTCAG                         GCAACAGCATTTGGCATGAAAAGCGTAGTTTACGTGCCTCAAATCAAATTA
genomic: AAATACCCATAATAAATGACCTTACTATGATTTTGGGCTCTATATCTCAGgtgatgtgaa ... tcttcattagGCAACAGCATTTGGCATGAAAAGCGTAGTTTACGTGCCTCAAATCAAATTA