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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcctctatgaattgacctaatttggttccatctttgcagtgaagcattatttttttcatcatcaaatcaattgctgcagGTATACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCTGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGGTATTAGTTTCTT

Basic information

species Glycine max
transcript GLYMA20G29480.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29480.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtcctctatgaattgacctaatttggttccatctttgcagtgaagcattatttttttcatcatcaaat---caattgctgc-------agGTATACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCTGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGGTATTAGTTTCTT
   | | || | ||| || || |||||||  | |||||    | |      ||| |    | || |||  ||   |||   ||||       |||| |||||| |||| ||||| ||||||||||||  |||||||||||| ||| |  |  | ||||||||||| || ||||| || |||             
--gtctgctttctgagtttac-taatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagcactgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481671|gb|AW200942.1|AW200942
EST:     TTCCAGGCATTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAG                         GTATACTCTATCAAGCATGATATCACAGATGTGACGTGTCTCATGCCTGGC
genomic: TTCCAGGCATTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGgtatgtcctc ... attgctgcagGTATACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccatctttgcagtgaagcattatttttttcatcatcaaatcaattgctgcagGTATACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCTGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGGTATTAGTTTCTT
                     attatttttttcatca  TA-rich tract