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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacaacctgagttgagatagcaaacattaagtgctcaaatccctctaattaaattaatggaagagacaaaattgagagattttaatcttgtttattcagACTCAACTATATACGGAACAGATTGATCGACTACGATCTCAG

Basic information

species Glycine max
transcript GLYMA20G29300.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601230|gb|BQ611561.1|BQ611561
EST:     GAATTGAGGAGCAGCTGCGGACAAGTTTGCAAAGAGTCAGGCAGAGAAAA                         ACTCAACTATATACGGAACAGATTGATCGACTACGATCTCAG
genomic: GAATTGAGGAGCAGCTGCGGACAAGTTTGCAAAGAGTCAGGCAGAGAAAAgtaagtaaca ... gtttattcagACTCAACTATATACGGAACAGATTGATCGACTACGATCTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaattaaattaatggaagagacaaaattgagagattttaatcttgtttattcagACTCAACTATATACGGAACAGATTGATCGACTACGATCTCAG
                                   ttttaat  putative branch site (score: 3)
                                         tcttgttt  CT-rich tract
                                  attttaatcttgttta  TA-rich tract