1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagattttctctatcatttatttgttattattaacatatttttggttgcttttaaaaagttcacacttaattttcttgcagAGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGCTTATTGCCAAAGATGTCTCTTGTGCATTGTCAGAGCTGC
species | Glycine max |
transcript | GLYMA20G28960.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCCTAAAA AGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGEST: gi|12689400|gb|BG155797.1|BG155797
genomic: TATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCCTAAAAgtaagatttt ... tttcttgcagAGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAG
EST: TATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCCTAAAA AGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGEST: gi|7458559|gb|AW666009.1|AW666009
genomic: TATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCCTAAAAgtaagatttt ... tttcttgcagAGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAG
EST: TATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCCTAAAA AGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAG
genomic: TATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCCTAAAAgtaagatttt ... tttcttgcagAGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAG
attattaacatatttttggttgcttttaaaaagttcacacttaattttcttgcagAGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGCTTATTGCCAAAGATGTCTCTTGTGCATTGTCAGAGCTGC
ttttcttgc CT-rich tract
ttttaaaaagttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattttctctatcatttatttgttattattaacatatttttggttgcttttaaaaagttcacacttaattttcttgcagAGCTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGCTTATTGCCAAAGATGTCTCTTGTGCATTGTCAGAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC