1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttatgtatttgactgttcactgtctatgtttattccatgtcggacatttggatattcaatggtctatgcaagaaataacataaattatcctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAATGAGGTGAAGCCTGTACCAAGGGTTGACAGTTCTGGACAGGTGTGTGG
species | Glycine max |
transcript | GLYMA20G28930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|6727143|gb|AW311497.1|AW311497
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|15662969|gb|BI700340.1|BI700340
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|151404166|gb|EV273976.1|EV273976
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|23728218|gb|BU762155.1|BU762155
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|192307092|gb|FK000042.1|FK000042
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|21676840|gb|BQ629191.1|BQ629191
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|10845849|gb|BF068885.1|BF068885
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGATCGTAACTAAGAGCTGTGGGGAAATTTTCTG-ACCATTCCCCCAAAG -ATTTTTCTTTTCAEST: gi|209702370|gb|BW656345.1|BW656345
genomic: AGATCGTAACTAAGAGCTGTGGG-AAATCTTCTGCACCATTCCCC-AAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|22523132|gb|BU081943.1|BU081943
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|151401746|gb|EV271559.1|EV271559
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|19937813|gb|BQ081432.1|BQ081432
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|19935707|gb|BQ080551.1|BQ080551
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAEST: gi|151409949|gb|EV279757.1|EV279757
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTA
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCCCGGAGGTTTGAGTAGTTTTGAGCATCCACTTEST: gi|192307091|gb|FK000041.1|FK000041
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCC-GGAGGTTTGAGCAGTTTTGAGCATCCACTT
EST: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAG GATTTTTCTTTTCAACATCC
genomic: AGAGATCGTAACTAAGAGCTGTGGGAAATCTTCTGCACCATTCCCCAAAGgtaataataa ... ctatgttcagGATTTTTCTTTTCAACATCC
catttggatattcaatggtctatgcaagaaataacataaattatcctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAATGAGGTGAAGCCTGTACCAAGGGTTGACAGTTCTGGACAGGTGTGTGG
aaataac putative branch site (score: 2)
ttatcct putative PPT
aaataacataaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgtatttgactgttcactgtctatgtttattccatgtcggacatttggatattcaatggtctatgcaagaaataacataaattatcctatgttcagGATTTTTCTTTTCAACATCCGGAGGTTTGAGCAGTTTTGAGCATCCACTTAATGAGGTGAAGCCTGTACCAAGGGTTGACAGTTCTGGACAGGTGTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - tgttcac
- - - - - - - - - - - gtctatg
- - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaga