Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctttgtttttgaatgccatttcaatcagataattaaaaaatatgtcaatgcctgccaacttttgaatctttgctgtactgtacag

Basic information

species Glycine max
transcript GLYMA20G28920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g00030.t01 (Vitis vinifera), 5'ss of exon 12
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctttgtttttgaatgccatttcaatcagataattaaaaaatatgtcaatgcctgccaacttt-tgaatctttgctgtactgtacag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | ||   |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| ||  ||      ||   |       |||||   || |  ||| |  ||||     || ||| | ||| ||   | |||| | |||
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattcccagctgatgt-------agatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag

upper sequence: GLYMA20G28920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g00560.t01 (Vitis vinifera), 5'ss of exon 12
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctttgtttttgaatgccatttcaatcagataattaaaaaatatgtcaatgcctgccaacttt-tgaatctttgctgtactgtacag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | ||   |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| ||  ||      ||   |       ||| |   || |  ||| |  ||||     || ||| | ||| ||   | |||| | |||
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattcccagctgatgt-------agacagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag