Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaatcttattttattgatgcattttcaacctttctttttatattattttttgattaatttactctacattataaatgcttacacaattatgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG

Basic information

species Glycine max
transcript GLYMA20G28860.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28860.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G165998_T01 (Zea mays), 3'ss of exon 5
gcaatcttattttattgatgcattttcaacctttctttttatattattttttgattaatt-tact-ctacattataaatgcttacaca-attatgatgtg-cagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG
    |||| | ||| |      | || |  |||   |     |  |     | | |||     || || |||| |  ||  ||   |    ||||||    |||||  ||||| | ||||| |||||||| || ||||| ||||||||||||||  ||||||||||||| || ||
----tcttctgttactttcttgtcttaagtcttctgtaaacaagaaccagctaaataacgacgctgctgcattgtggattttttttcctgctatgattcctcagGCAATGCGTCTATTTGTGGGTGAGCCTGTCTGGACACCATACAATCGTCCGCATGACCATCTCCCGGCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888471|gb|BQ741684.1|BQ741684
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|213611023|gb|DB970950.1|DB970950
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|16995955|gb|BM085327.1|BM085327
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|254333158|gb|GR850408.1|GR850408
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|7693449|gb|AW761541.1|AW761541
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|19053712|gb|BM732379.1|BM732379
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|37995680|gb|CF807269.1|CF807269
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|213617570|gb|DB969282.1|DB969282
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|209728725|gb|BW655418.1|BW655418
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|192312869|gb|FK005453.1|FK005453
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|192312868|gb|FK005452.1|FK005452
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|120492785|gb|EH220952.1|EH220952
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|209704933|gb|BW661723.1|BW661723
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|120492659|gb|EH220826.1|EH220826
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|26060181|gb|CA803095.1|CA803095
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|120492941|gb|EH221108.1|EH221108
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|22522689|gb|BU081500.1|BU081500
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|24136099|gb|BU926609.1|BU926609
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|21887607|gb|BQ740820.1|BQ740820
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|21257093|gb|BQ453981.1|BQ453981
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|298175141|gb|HO014944.1|HO014944
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGT
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGT
EST: gi|298189141|gb|HO037544.1|HO037544
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|192297717|gb|FG989952.1|FG989952
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|26059241|gb|CA802155.1|CA802155
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|298179497|gb|HO027968.1|HO027968
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGT
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGT
EST: gi|151396844|gb|EV266717.1|EV266717
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|254338222|gb|GR849747.1|GR849747
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|19052601|gb|BM731268.1|BM731268
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|192294801|gb|FG987490.1|FG987490
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|6963527|gb|AW432220.1|AW432220
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTTGCGTTTTTT-GTTGGTGAGCCAGTTTGGACTCCATACAATCGTCC
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTT-GCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCC
EST: gi|254332911|gb|GR850161.1|GR850161
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|26058060|gb|CA800974.1|CA800974
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|254336203|gb|GR842382.1|GR842382
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|254324010|gb|GR836242.1|GR836242
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|254336202|gb|GR842381.1|GR842381
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|15813927|gb|BI786202.1|BI786202
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTC
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTC
EST: gi|254323704|gb|GR836043.1|GR836043
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|8827472|gb|BE211202.1|BE211202
EST:     CTGCCGGAATNTATCATCGCTNTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|151408479|gb|EV278287.1|EV278287
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|9898912|gb|BE607880.1|BE607880
EST:     CTGCCGGAATNTATCATCGCTGTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
EST: gi|23052890|gb|BU577381.1|BU577381
EST:     CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA
genomic: CTGCCGGAATTTATCATCGCTTTACGCTAGATGAGAGCAACTACATTAAGgtattgattg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttgattaatttactctacattataaatgcttacacaattatgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG
                               tgcttac  putative branch site (score: 2)
     ttgattaatttactct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaatcttattttattgatgcattttcaacctttctttttatattattttttgattaatttactctacattataaatgcttacacaattatgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCATACAATCGTCCAAATGACCATCTCCCTGCAAG

- - - - - - - - - tgcattt
- - - - - - - - - - - - - caacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac