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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg...

Basic information

species Glycine max
transcript GLYMA20G28780.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 5
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctca-atcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
||||||||||||||| ||||||| ||| || |||||||||||||| || ||||| ||||| || || ||||| || ||||| || ||||| || |||||||| | | ||  ||  | |    | ||| ||||    ||   ||  ||  |||   || | | ||    | || |     | |||  ||||           
TGAGAAGGCGACATCCAGTATTTTCCCCCTTCAGAATGTGTTTGTCCGCAAAGTGAAGATTCTAAAGGCCCCGAAATTTGACCTGGGGAAGCTCATGGAGgtgactgttgcat--tcagtaccgtttcatttcaggcttgtatgttgtgtcaatcaacaaacttgacatgacttgtctcttgtt--ccag-----------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 5'ss of exon 5
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
 |||||||| ||||| || || | ||| || |||||||||||||| || |||||||||||||| || ||||| || ||||| || || || || |||||||| | | ||  | |||  | | | |||      |   |  | | ||  | |    ||  |   | ||| |  |   ||||  || |  ||   ||     
CGAGAAGGCCACATCAAGCATCTTCCCGCTTCAGAATGTGTTTGTGCGCAAAGTCAAGATCCTCAAGGCCCCAAAATTTGACCTGGGCAAGCTTATGGAGgtgactgtt--acaatctaatccattt------tcatttgaccttgtatgacatgaatcagcat-tgtaatgtgg-cttg--tgtcatgttccag-----

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G145258_T01 (Zea mays), 5'ss of exon 5
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgata-----ataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
||||||| | || || || || | ||| || || || || ||  | || || || ||||| || || ||||| ||||| |||||||||||||| ||||||||||||  |  ||      | | || | ||      | | || |  | |    | ||   ||| | ||  || | |  |                          
TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgctacatgcatgcaaatagattttccagactatctccctgttactttttatcctaaa-acttgttgcttctcag-------------------------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G030915_T06 (Zea mays), 5'ss of exon 5
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAG-TCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgata-----ataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
 |||||| | || || || || | ||| || || || || ||  | || || | | ||||| || || ||||| ||||| |||||||||||||| ||||||||||||  |  ||      | | || | |       | | || |  | |    | ||   |||  || |   ||| |                            
-GAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgctacatgcatgcaaatagatttaccagactatctccctgttacttgttatcctaaaacttgttgcttatcag--------------------------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G34670.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgccc-agtctgagtttgg
||||||||| |||    | || |||||  |||||||||||||  | |||||||| |||||||| || || || |||||||| ||||| || || |||||||||  ||      | | |  ||  ||| ||  ||    || |  | | |  |   ||  || |  ||  | ||||   |  |||     || |   ||| |
TGAGAAGGCAACACAGGGCATCTACCCGTTGCAGAATGTGTTCATCCGTAAAGTGAAGATCCTAAAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGgtagatt----gaagtcacattaatttcatcattgatgcactagt-cttggttccaaggatgtaatgaaatctaactctttttgttttggtttatctttag

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G04840.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttt--tttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
||||||||| ||     | || |||||||| |||||||| ||  | ||||||||||||||||| || |||||||| || || ||||| || || ||||| || | |     | |  ||   |   || ||| |  ||    |  ||||    ||  ||| |   | ||  |   |||     || |                
TGAGAAGGCAACTCAGGGCATCTACCCTCTTCAGAATGTTTTCATCCGTAAAGTCAAGATCCTCAAGGCCCCTAAATTCGACCTTGGCAAGCTCATGGATgtgagtgaagaaaatgaacactacatttattatggttcaatatccatgttatatataaactgaatgcttgtgtttaattggtgtag----------------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgat-aataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg-
 |||||||| || || || || || ||| | ||||||||||   |||| ||||| |||||| ||||||| ||||||||||||||||| || |||||||||||| ||||||  | ||     ||| ||||  | |||||| | | |     ||| || | ||    |  |||   |||      || |   | |   |     
CGAGAAGGCAACTTCAAGCATCTATCCTTTACAGAATGTGTACATTCGGAAAGTTAAGATCTTGAAAGCTCCTAAGTTTGATCTTGGAAAGCTGATGGAGgtatttttttttttaactcttttcatttgtctattttctaatttaacatacataaacattaaa--ccattaaaaaaaaaaacctgtcacctttttatgccaa

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
 ||||| | |||  |  | || || || ||||||||    |   ||||||| || ||||| ||||| ||||| || || ||||||||||| ||||||||||           |||| |||  |     || |||    | |      ||  ||   | | |  |||  ||| |    |  |                   
CGAGAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGTAAGGTGAAGATTCTGAAGGCCCCAAAATTCGATCTTGGGAAGCTGATGGAGg-----------taatgaagagcc----atctttccagcgaaaccttcttgtgcttactgtgctcttgtacatttcttcag-------------------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: EFJ11589 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
 || || | |||  |  | || || || ||||||||    |   |||| || || ||||||||||| ||||| ||||| ||||||||||| ||||||||||           |||| |||        |   | ||  ||   |   ||  ||     || | ||  ||  | |                          
CGAAAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGCAAGGTGAAGATCCTGAAGGCCCCAAAGTTCGATCTTGGGAAGCTGATGGAGg-----------taatgaag-------aaccatatttccagcaagaacttgtgtgct-tactgtcatttctccag-------------------------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: EFJ09804 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
 ||||| | |||  |  | || || || ||||||||    |   ||||||| || ||||| ||||| ||||| ||||| ||||||||||| ||||||||||           |||| |||        |   | ||  ||   |   ||  ||     || | ||  ||  | |                          
CGAGAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGTAAGGTGAAGATTCTGAAGGCCCCAAAGTTCGATCTTGGGAAGCTGATGGAGg-----------taatgaag-------aaccatctttccagcaagaacttgtgtgct-tactgtcatttctccag-------------------------

upper sequence: GLYMA20G28780.2 (Glycine max), 5'ss of exon 4
lower sequence: EFJ11647 (Selaginella moellendorffii), 5'ss of exon 6
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg
 ||||| | |||  |  | || || || ||||||||    |   ||||||| || ||||| ||||| ||||| ||||| ||||||||||| ||||||||||           |||| |||  |     || |||    | |      ||  ||   | | |  |||  ||| |    |  |                   
CGAGAAAGTGACTGCGGGAATCTATCCCCTGCAGAACACTTACATTCGTAAGGTGAAGATTCTGAAGGCCCCAAAGTTCGATCTTGGGAAGCTGATGGAGg-----------taatgaagagcc----atctttccagcgaaaccttcttgtgcttactgtgctcttgtacatttcttcag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193421634|gb|FK391893.1|FK391893
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTACAATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTG
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTT-CA-TGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTG
EST: gi|208064299|gb|GD866681.1|GD866681
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGAT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGAT
EST: gi|31468726|gb|CD410754.1|CD410754
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCCAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|254328146|gb|GR835111.1|GR835111
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|16346851|gb|BI972446.1|BI972446
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193411136|gb|FK376787.1|FK376787
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|13311550|gb|BG405201.1|BG405201
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGA
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGA
EST: gi|37996131|gb|CF807720.1|CF807720
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|12496435|gb|BG047063.1|BG047063
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|11688755|gb|BF596431.1|BF596431
EST:     AAGTCAAGATCCTGAATGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCATAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|214007185|gb|DB985805.1|DB985805
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|192323655|gb|FK015961.1|FK015961
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193391999|gb|FK353356.1|FK353356
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTG
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTG
EST: gi|208138293|gb|GD940189.1|GD940189
EST:     TGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: TGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|7690905|gb|AW759041.1|AW759041
EST:     AAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|6725233|gb|AW309632.1|AW309632
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|208134304|gb|GD927043.1|GD927043
EST:     GTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: GTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|7285181|gb|AW597668.1|AW597668
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|10846345|gb|BF071314.1|BF071314
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCCGAAGATGTTGGTGGCCAGGG-AGACAGACCTGC
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTG-CCAAGGTAGACAGACCTGC
EST: gi|193332068|gb|FK299884.1|FK299884
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|208190854|gb|GD989570.1|GD989570
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|16283122|gb|BI945383.1|BI945383
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|207810173|gb|GD781941.1|GD781941
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGAT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGAT
EST: gi|6726462|gb|AW310816.1|AW310816
EST:     AAAGCCCNTAAGTTTGATCTTGGGAAANTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|16348068|gb|BI973663.1|BI973663
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193519627|gb|FK473656.1|FK473656
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|6069354|gb|AW099042.1|AW099042
EST:     GTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: GTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|19052961|gb|BM731628.1|BM731628
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193310289|gb|FK273695.1|FK273695
EST:     GTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: GTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|27427000|gb|CA938520.1|CA938520
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|6846963|gb|AW349253.1|AW349253
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|21994018|gb|BQ785546.1|BQ785546
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|7691997|gb|AW760113.1|AW760113
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAATGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|31460706|gb|CD402734.1|CD402734
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|213605119|gb|DB982187.1|DB982187
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193330735|gb|FK296227.1|FK296227
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|6725027|gb|AW309426.1|AW309426
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193320036|gb|FK287657.1|FK287657
EST:     AAGTCAAGATCCTGAAAGCTCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCCGAGGATGTTGGTGCAAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|24205171|gb|BU964424.1|BU964424
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|254327576|gb|GR837185.1|GR837185
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193424524|gb|FK388959.1|FK388959
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|17024083|gb|BM095117.1|BM095117
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCT
EST: gi|208174047|gb|GD969086.1|GD969086
EST:     CTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: CTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|193379408|gb|FK344854.1|FK344854
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|19269280|gb|BM885536.1|BM885536
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|207727015|gb|GD702939.1|GD702939
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGAT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGAT
EST: gi|193319015|gb|FK283821.1|FK283821
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTCTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|17022911|gb|BM093945.1|BM093945
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|17021675|gb|BM092709.1|BM092709
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGCCAAGGTAGACAGACCTGCT
EST: gi|298177811|gb|HO027364.1|HO027364
EST:     AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAG                         GTTCATGGAGATTACTCAGAGGATGTTGGTGC
genomic: AAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaatttttt ... gtccttgtagGTTCATGGAGATTACTCAGAGGATGTTGGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGAAGGCGACATCTAGTATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGAAAGCCCCTAAGTTTGATCTTGGGAAACTGATGGAGgtaattttttgataataaagttcttttgatttttttctcaatcatgcctcatgaaaaatattttctgttacctaaacttggttgcccagtctgagtttgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA