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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAACTACACATTGAGGATGTTTTGCATTGGATTTACCAAGAGAAGAGCTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggactaatgtttggtagttagatgctacttctgtttactaacaatctcgttaattttccattcagaaacttgtggtacaaagtcaacatggtat...

Basic information

species Glycine max
transcript GLYMA20G28780.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994300|gb|CF806046.1|CF806046
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|13252192|gb|BG363095.1|BG363095
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGG
EST: gi|207716109|gb|GD698479.1|GD698479
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAAGATACATGACCAACCA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGA-GAT-CATGACCAACCA
EST: gi|17153389|gb|BM143322.1|BM143322
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTANGAAGATGAGGGAGATCATGACCAACCCAGGCA-CATCCTGTGA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACC-AGGCAACATCCTGTGA
EST: gi|208064299|gb|GD866681.1|GD866681
EST:     AGCCAGATTAGGCAG                         ATTCGTAGGAAGATGAGGGAGAATCATGACCAACCAGGCAACATCCTGTGA
genomic: AGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAG-ATCATGACCAACCAGGCAACATCCTGTGA
EST: gi|193561712|gb|FK521617.1|FK521617
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|193373337|gb|FK342335.1|FK342335
EST:     AGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: AGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|31468726|gb|CD410754.1|CD410754
EST:     TCAAGCCCGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: TCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|208315708|gb|GE114344.1|GE114344
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGAT
EST: gi|23064192|gb|BU578965.1|BU578965
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAAC
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAAC
EST: gi|8401864|gb|BE057498.1|BE057498
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAAGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|254328146|gb|GR835111.1|GR835111
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|15204252|gb|BI427020.1|BI427020
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTANGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|16346851|gb|BI972446.1|BI972446
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|120533868|gb|EH262001.1|EH262001
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|15662599|gb|BI699970.1|BI699970
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|13311550|gb|BG405201.1|BG405201
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|193512616|gb|FK471816.1|FK471816
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGAT
EST: gi|207821053|gb|GD792176.1|GD792176
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|37996131|gb|CF807720.1|CF807720
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|11688755|gb|BF596431.1|BF596431
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|192331682|gb|FK023471.1|FK023471
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|214007185|gb|DB985805.1|DB985805
EST:     CTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|19348187|gb|BM892719.1|BM892719
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|254327575|gb|GR837184.1|GR837184
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|193541430|gb|FK499154.1|FK499154
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|192323655|gb|FK015961.1|FK015961
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|9259134|gb|BE347281.1|BE347281
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|8282818|gb|BE020379.1|BE020379
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCANGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|298192921|gb|HO033355.1|HO033355
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACGG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCT
EST: gi|193455482|gb|FK420887.1|FK420887
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACA
EST: gi|151409731|gb|EV279539.1|EV279539
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|208283192|gb|GE079022.1|GE079022
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCCAACCAGGCAACATCCTGTGA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGA-CCAACCAGGCAACATCCTGTGA
EST: gi|6725233|gb|AW309632.1|AW309632
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|207791314|gb|GD763165.1|GD763165
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|193426556|gb|FK389443.1|FK389443
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGA
EST: gi|7285181|gb|AW597668.1|AW597668
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|19348009|gb|BM892541.1|BM892541
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAG
EST: gi|10846345|gb|BF071314.1|BF071314
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|208170314|gb|GD968387.1|GD968387
EST:     CTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACA
EST: gi|193578925|gb|FK536253.1|FK536253
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGAT
EST: gi|207810173|gb|GD781941.1|GD781941
EST:     AGCCAGATTAGGCAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: AGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|9204188|gb|BE330412.1|BE330412
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGATGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|16348068|gb|BI973663.1|BI973663
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|6567011|gb|AW234638.1|AW234638
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAAGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|10709127|gb|BF008851.1|BF008851
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAAGGAGATCATGACCCAACCAG-CAACATCCTGTGA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACC-AACCAGGCAACATCCTGTGA
EST: gi|213605768|gb|DB968600.1|DB968600
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|19052961|gb|BM731628.1|BM731628
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|192325026|gb|FK016152.1|FK016152
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|192298966|gb|FG987711.1|FG987711
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|213618301|gb|DB973071.1|DB973071
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGG
EST: gi|10843196|gb|BF066509.1|BF066509
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAAGGAGATCATGACCAACCAAGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|37997385|gb|CF808974.1|CF808974
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|6846963|gb|AW349253.1|AW349253
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|7691997|gb|AW760113.1|AW760113
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|213601175|gb|DB964668.1|DB964668
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCA
EST: gi|8283035|gb|BE020596.1|BE020596
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATG
EST: gi|7684691|gb|AW755339.1|AW755339
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTATGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|13311654|gb|BG405305.1|BG405305
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGG
EST: gi|6725027|gb|AW309426.1|AW309426
EST:     TTAACAAAGTGAAGAGAACTTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|24205171|gb|BU964424.1|BU964424
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|19268857|gb|BM885113.1|BM885113
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGA
EST: gi|18730645|gb|BM525997.1|BM525997
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|254327576|gb|GR837185.1|GR837185
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|208160066|gb|GD952622.1|GD952622
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCGGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|193694878|gb|FK632962.1|FK632962
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCA
EST: gi|17024083|gb|BM095117.1|BM095117
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|6913161|gb|AW394691.1|AW394691
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAAGAAGATGAGGGAGATCATGACCAACCAAGCAACATCCTGTGAA
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|7691353|gb|AW759411.1|AW759411
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGANGGAGATCATGACCAACCANGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|18692874|gb|BM521722.1|BM521722
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATG
EST: gi|19269280|gb|BM885536.1|BM885536
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|207727015|gb|GD702939.1|GD702939
EST:     AGCCAGATTAGGCTAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGA
genomic: AGCCAGATTAGAC-AGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGA
EST: gi|193484466|gb|FK451144.1|FK451144
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCAT
EST: gi|17022911|gb|BM093945.1|BM093945
EST:     CACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|26057787|gb|CA800701.1|CA800701
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|209713589|gb|BW681795.1|BW681795
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|193598430|gb|FK554554.1|FK554554
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATG
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATG
EST: gi|151398543|gb|EV268414.1|EV268414
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
EST: gi|18690827|gb|BM519675.1|BM519675
EST:     TAAACCA-GTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTANGAAGAAGAGGGAGATCATGACCAACCAGGCAACATCCTGT
genomic: TAA-CCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGT
EST: gi|298177811|gb|HO027364.1|HO027364
EST:     CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAG                         ATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT
genomic: CTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggac ... atcttttcagATTCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATAACTACACATTGAGGATGTTTTGCATTGGATTTACCAAGAGAAGAGCTAACCAAGTGAAGAGAACCTGCTATGCACAATCAAGCCAGATTAGACAGgtatgtggactaatgtttggtagttagatgctacttctgtttactaacaatctcgttaattttccattcagaaacttgtggtacaaagtcaacatggtat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA