1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatattccattgacttgttatcctgtacttcagttttgttctttattctgtcttattaaatgaggcaatgagcatatgcaggaaatatgaattctacttatccttgtttatcatgaatgtttgtttgtccagGATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGAGATAACAAAAGCACTTTGATACCAGATGGGGTTTCAGATTTGCTGAGTG
species | Glycine max |
transcript | GLYMA20G28750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCTAGTTCGGATAAACAAAATGCCTGTTGAATGCAATCAAGAACAAAAG GATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGAEST: gi|192297523|gb|FG992721.1|FG992721
genomic: CCCTAGTTCGGATAAACAAAATGCCTGTTGAATGCAATCAAGAACAAAAGgtaatattcc ... gtttgtccagGATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGA
EST: CCCTAGTTCGGATAAACAAAATGCCTGTTGAATGCAATCAAGAACAAAAG GATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGAEST: gi|151397494|gb|EV267367.1|EV267367
genomic: CCCTAGTTCGGATAAACAAAATGCCTGTTGAATGCAATCAAGAACAAAAGgtaatattcc ... gtttgtccagGATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGA
EST: CCCTAGTTCGGATAAACAAAATGCCCGTTGAATGCAATCAAGAACAAAAG GATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGA
genomic: CCCTAGTTCGGATAAACAAAATGCCTGTTGAATGCAATCAAGAACAAAAGgtaatattcc ... gtttgtccagGATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGA
gcaggaaatatgaattctacttatccttgtttatcatgaatgtttgtttgtccagGATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGAGATAACAAAAGCACTTTGATACCAGATGGGGTTTCAGATTTGCTGAGTG
tttgttt CT-rich tract
aaatatgaattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattccattgacttgttatcctgtacttcagttttgttctttattctgtcttattaaatgaggcaatgagcatatgcaggaaatatgaattctacttatccttgtttatcatgaatgtttgtttgtccagGATGCAGTAATTGAAACTTGTCTCCATGAAAATGGCTATCAAAGTTCAAGAGATAACAAAAGCACTTTGATACCAGATGGGGTTTCAGATTTGCTGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG