Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttataaactattctcaagtgagaaatgctaataacactaatttgtccgataacagctcactttatgacagaatttaacactccgtttttaaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGGTGA

Basic information

species Glycine max
transcript GLYMA20G28720.5
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541388|gb|BU091231.1|BU091231
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|192334699|gb|FK025232.1|FK025232
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|6848389|gb|AW350679.1|AW350679
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|24135390|gb|BU925900.1|BU925900
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGGACTTGTATATCCCAACAGTGGG
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGG
EST: gi|192323593|gb|FK017114.1|FK017114
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCA-GAAG                         -CAACAAGTAAACCAGTACTTGT
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGT
EST: gi|58018094|gb|CX704836.1|CX704836
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|16343199|gb|BI968794.1|BI968794
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|192306173|gb|FG996815.1|FG996815
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|14990114|gb|BI315787.1|BI315787
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|192334698|gb|FK025231.1|FK025231
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|15814658|gb|BI786933.1|BI786933
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCC
EST: gi|151407441|gb|EV277256.1|EV277256
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAGCAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|22541423|gb|BU091266.1|BU091266
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|151406337|gb|EV276152.1|EV276152
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
EST: gi|6566795|gb|AW234427.1|AW234427
EST:     ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAG                         GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC
genomic: ATTGTACTGCTCCTAGATTTATTCATGGATTGATTTCATTTATCAAGAAGgtgcaacttt ... taaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccgataacagctcactttatgacagaatttaacactccgtttttaaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGGTGA
                            atttaac  putative branch site (score: 3)
                                    ctccgttttt  CT-rich tract
                                         tttttaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccttataaactattctcaagtgagaaatgctaataacactaatttgtccgataacagctcactttatgacagaatttaacactccgtttttaaatagcagGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGGTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA