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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagttctgcttctctctttttacatggcctcagcttgtttttatgttcatgtttaaccaacttcaaatctaattccagttataataaatgatact...

Basic information

species Glycine max
transcript GLYMA20G28720.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334698|gb|FK025231.1|FK025231
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334698|gb|FK025231.1|FK025231
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334698|gb|FK025231.1|FK025231
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334698|gb|FK025231.1|FK025231
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6848389|gb|AW350679.1|AW350679
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6848389|gb|AW350679.1|AW350679
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6848389|gb|AW350679.1|AW350679
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6848389|gb|AW350679.1|AW350679
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|22541423|gb|BU091266.1|BU091266
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|22541423|gb|BU091266.1|BU091266
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|22541423|gb|BU091266.1|BU091266
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|22541423|gb|BU091266.1|BU091266
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|16343199|gb|BI968794.1|BI968794
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|16343199|gb|BI968794.1|BI968794
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|16343199|gb|BI968794.1|BI968794
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|16343199|gb|BI968794.1|BI968794
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6566795|gb|AW234427.1|AW234427
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6566795|gb|AW234427.1|AW234427
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6566795|gb|AW234427.1|AW234427
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|6566795|gb|AW234427.1|AW234427
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|14990114|gb|BI315787.1|BI315787
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|14990114|gb|BI315787.1|BI315787
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|14990114|gb|BI315787.1|BI315787
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|14990114|gb|BI315787.1|BI315787
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192306173|gb|FG996815.1|FG996815
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192306173|gb|FG996815.1|FG996815
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192306173|gb|FG996815.1|FG996815
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192306173|gb|FG996815.1|FG996815
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334699|gb|FK025232.1|FK025232
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334699|gb|FK025232.1|FK025232
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334699|gb|FK025232.1|FK025232
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|192334699|gb|FK025232.1|FK025232
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151406337|gb|EV276152.1|EV276152
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151406337|gb|EV276152.1|EV276152
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151406337|gb|EV276152.1|EV276152
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151406337|gb|EV276152.1|EV276152
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|22541388|gb|BU091231.1|BU091231
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                       
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAAT--G-Ggtggtgagtt ... tgtcttat
EST: gi|58018094|gb|CX704836.1|CX704836
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|58018094|gb|CX704836.1|CX704836
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|58018094|gb|CX704836.1|CX704836
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|58018094|gb|CX704836.1|CX704836
EST:     TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151407441|gb|EV277256.1|EV277256
EST:     TTGTATATCCCAGCAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151407441|gb|EV277256.1|EV277256
EST:     TTGTATATCCCAGCAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151407441|gb|EV277256.1|EV277256
EST:     TTGTATATCCCAGCAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-
EST: gi|151407441|gb|EV277256.1|EV277256
EST:     TTGTATATCCCAGCAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGG                         G
genomic: TTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagtt ... tgtcttatag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGgtggtgagttctgcttctctctttttacatggcctcagcttgtttttatgttcatgtttaaccaacttcaaatctaattccagttataataaatgatact

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA