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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctgcttctctctttttacatggcctcagcttgtttttatgttcatgtttaaccaacttcaaatctaattccagttataataaatgatacttcc...

Basic information

species Glycine max
transcript GLYMA20G28720.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990114|gb|BI315787.1|BI315787
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|22541388|gb|BU091231.1|BU091231
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|192334698|gb|FK025231.1|FK025231
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|58018094|gb|CX704836.1|CX704836
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|192334699|gb|FK025232.1|FK025232
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTTTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|16343199|gb|BI968794.1|BI968794
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|151407441|gb|EV277256.1|EV277256
EST:     TATATCCCAGCAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAG-CAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|6566795|gb|AW234427.1|AW234427
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|192306173|gb|FG996815.1|FG996815
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|151406337|gb|EV276152.1|EV276152
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|22541423|gb|BU091266.1|BU091266
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
EST: gi|6848389|gb|AW350679.1|AW350679
EST:     TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTG                         AAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG
genomic: TATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctg ... tgtcttatagAAATCAAGTGGGGCAGCAGAGCATGATTTTGTCTCCTACATAGGCAAGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGCAACAAGTAAACCAGTACTTGTATATCCCAACAGTGGGGAGACTTATATCGCTGAGAGCAACCAATGGGTGgtgagttctgcttctctctttttacatggcctcagcttgtttttatgttcatgtttaaccaacttcaaatctaattccagttataataaatgatacttcc

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