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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAGAAGGTTTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCTGGTTTgttttcttctcttttgtgataattggattgtagtgaaaag

Basic information

species Glycine max
transcript GLYMA20G28700.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28700.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 2
-AGAAAGAAGGTTTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCT---GGTTTgttttcttctcttttgtgataattggattgtagtgaaaag--------------------------------------------------------------------------------------------------------
 || ||||||||  |||| |||||||| || |||||| | || || || || ||||||||||| ||||||||||| |||||||| ||||| ||||    ||||||||||    || ||| |  | ||   |||  |||                                                                                                              
TAGGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGTTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttgcatcatttatt-tcatcttattccagtattttttttctttttcctcagttctgggttgtttgtgacattgtgagttttcttagtcaactgcattctatcgtatgaccttatataaatgttttcatatctatttacag

upper sequence: GLYMA20G28700.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G061990_T01 (Zea mays), 5'ss of exon 2
-AGAAAGAAGGTTTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCT---GGTTTgttttctt--ctcttttgtgataattggattgtagtgaaaag---------------------------------------------------------------------------------------------------------------------------------
 |  ||||||||  |||| |||||||| || |||||| | || || || || ||||||||||| ||||| ||||| |||||||| ||||| ||||    |||||||||| ||   || ||| |    ||    ||  ||| |                                                                                                                                     
TAAGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGCTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttttgcatcatttattcccatcctgtttcagtaatctttttcctcagttctagattgtttgtgagaaattgtgaattttcttagtcaaatgcattcaattgtatggccctgtatttttctgtatggctgttttggcactaatgttttgctcttttatctctttatag

upper sequence: GLYMA20G28700.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
----AGAAAGAAGGTTTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCTGGTTTgttttcttctctttt----gtgataattggattgtagtgaaaag--------------------------------------------------------
    |  |||||||||||||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||||| ||  |||| || ||  | | ||| ||| ||       | |    ||         |    ||| || |                                                         
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag

upper sequence: GLYMA20G28700.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 2
----AGAAAGAAGGTTTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCTGGTTTgttttcttctcttttgtgataattggattgtagtgaaaag--------------------------------------------------------
    || ||||||||||| ||||| ||||||||||||||  | ||||||||||| ||||||||||||||||| || |||||| ||||||||||||| | ||| ||||||  |     |  |  ||      || |  |                                                              
TCAAAGGAAGAAGGTTTTAATTTTAGGTGGAGGACCAAACCGGATTGGTCAAGGTATTGAGTTTGACTACTGCTGCTGTCATACATCCTTTGCTCTCCAGgtatgttttgcttctgctgtttgtaggctatttatgttctcttcttcctatggtttttggtctccacatgcctcttgttatgtgaacctgggtccattga