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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctgctcaccctcataaataattccatgtttattgcttaacttcaagtgtattatcactgtaaaatagacataatgagtctcaattattgacattcctggcagTTGAGAATAGAGCAGAAAAGAGGCCGTGCGTTTGTGGGATGGAATGAAGGGAAGATATATTTTCCTCCAACTTACAAGTATTCAACTAATTCAGATAGAT

Basic information

species Glycine max
transcript GLYMA20G28680.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047161|gb|CA784038.1|CA784038
EST:     AGGCACTCGTTGAGATGCAAAACTGGAGAGCATTGTTAGAGAATGACCAA                         TTGAGAATAGAGCAGAAAAGAGGCCGTGCGTTTGTGGGATGGAATGAAGGG
genomic: AGGCACTCGTTGAGATGCAAAACTGGAGAGCATTGTTAGAGAATGACCAAgtatgtctgc ... ttcctggcagTTGAGAATAGAGCAGAAAAGAGGCCGTGCGTTTGTGGGATGGAATGAAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattatcactgtaaaatagacataatgagtctcaattattgacattcctggcagTTGAGAATAGAGCAGAAAAGAGGCCGTGCGTTTGTGGGATGGAATGAAGGGAAGATATATTTTCCTCCAACTTACAAGTATTCAACTAATTCAGATAGAT
                                     tattgac  putative branch site (score: 2)
                                           cattcct  CT-rich tract
            taaaatagacataat  TA-rich tract