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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCTGTCCCCATTGGATGGTCGTTATTGGAGCAAAGTTAAGGAACTGACTCCTTTTCTGAGTGAATATGGCTTAATATACTTTCGGGTTCTTGTTGAGgtacccttttgctgattcccctcttttttaagacccttttgattgaagaacccttttttgttttctgtgttgaactttctcttttgggtag

Basic information

species Glycine max
transcript GLYMA20G28590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28590.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 2
GGCTCTGTCCCCATTGGATGGTCGTTATTGGAGCAAAGTTAAGGAACTGACTCCTTTTCTGAGTGAATATGGCTTAATATACTTTCGGGTTCTTGTTGAGgtacccttttgctgattcccctcttttttaagacccttttgattgaagaacccttttttgttttct---gtgttgaactttctcttttgggtag-------
 ||| |||| || |||||||||||||||||||| ||||| |||||  || ||||||   |||||||||||||| ||||  ||||||| ||||||||||||||||   |||  |      |||| | ||||    | | ||  ||  | | |   | |     |  |   |   | |||||| | | |   |||        
AGCTTTGTCGCCTTTGGATGGTCGTTATTGGAGTAAAGTCAAGGACTTGGCTCCTTACATGAGTGAATATGGCCTAATCCACTTTCGAGTTCTTGTTGAGgtactactttaattcaaaacctcctatttagtgtcgtattatttagataccttctctactcatgttagagcagtcaactttgt-tatcatgtattagtgta