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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtatatttctactggtgctgcaattaattcactttttttttttttaatgattttctcaactcgagttgcagGGTGGACCTGGGATGATCACAACTATTATCCAG

Basic information

species Glycine max
transcript GLYMA20G28400.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336068|gb|CO979934.1|CO979934
EST:     CCCATTCTAAAACGTGGAAGGATATATCATGGACAAAAAAGCAATTTCAG                         GGTGGACCTGGGATGATCACAACTATTATCCAG
genomic: CCCATTCTAAAACGTGGAAGGATATATCATGGACAAAAAAGCAATTTCAGgtggtatatt ... cgagttgcagGGTGGACCTGGGATGATCACAACTATTATCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgcaattaattcactttttttttttttaatgattttctcaactcgagttgcagGGTGGACCTGGGATGATCACAACTATTATCCAG
                         ttttaat  putative branch site (score: 3)
     aattaattcacttttt  TA-rich tract