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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacttgtattttattaaaatttctgttaagttttcttgtttttattgaaaccgtggaatgcaaaaatactgattttcatagatggttttttttaaaacagATCACTTGATAGCAGATGATTTCTCAGCTGAACTGGCTGATGGGTTGGCCTATTTGGCTGGTCATGATGACGAATCCAGACCTGTTATG

Basic information

species Glycine max
transcript GLYMA20G28380.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811668|gb|BQ296146.1|BQ296146
EST:     TTCGAAGCAACTCAAGGCTTGTCTTGCTTGGAGAGAGAGTGTTATCGCTG                         ATCACTTGATAGCAGATGATTTCTCAGCTGAACTGGCTGATGGGTTGGCCT
genomic: TTCGAAGCAACTCAAGGCTTGTCTTGCTTGGAGAGAGAGTGTTATCGCTGgtatattcca ... tttaaaacagATCACTTGATAGCAGATGATTTCTCAGCTGAACTGGCTGATGGGTTGGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaccgtggaatgcaaaaatactgattttcatagatggttttttttaaaacagATCACTTGATAGCAGATGATTTCTCAGCTGAACTGGCTGATGGGTTGGCCTATTTGGCTGGTCATGATGACGAATCCAGACCTGTTATG
                     tactgat  putative branch site (score: 2)
                                        tttttttt  putative PPT
                                    atggttttttttaaaa  TA-rich tract