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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaccaaacactagagaaaaattttgaccctttctgctatatttatttattgaattttttttcaatactgaagGTTCACTCGTTTGCTGGCCTTTACAATAGAGGTGGCCATTTCGACCATGCCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAA

Basic information

species Glycine max
transcript GLYMA20G28380.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048733|gb|CA785186.1|CA785186
EST:     ATTTTTCGTTTGAAGCAAGATTATCAAAAGTTGCATTCCCAGAAGAT                         GTTCACTCGTTTGCTGGCCTTTACAATAGAGGTGGCCATTTCGACCATGCC
genomic: ATTTTTCGTTTGAAGCAAGATTATCAAAAGTTGCATTCCCAGAAGATgtaagttacc ... aatactgaagGTTCACTCGTTTGCTGGCCTTTACAATAGAGGTGGCCATTTCGACCATGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattttgaccctttctgctatatttatttattgaattttttttcaatactgaagGTTCACTCGTTTGCTGGCCTTTACAATAGAGGTGGCCATTTCGACCATGCCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAA
   ttttgac  putative branch site (score: 3)
                                    ttttttttca  putative PPT
            tttctgctatatttat  TA-rich tract