1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcacattgttaaactcaatttaaccataagctataatttaaaggttgaacacatttgggaagtatgtaaattaaattaactagttggttggttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAAAATTGTGGCGGAGTACTACCCAGGAAGGCTATGCAAAGCGTTTGTCAT
species | Glycine max |
transcript | GLYMA20G28380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAA GCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAEST: gi|20811668|gb|BQ296146.1|BQ296146
genomic: CCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAAgtaagtgcaa ... gttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGA
EST: TTCGACCATGCCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAA GCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGA
genomic: TTCGACCATGCCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAAgtaagtgcaa ... gttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGA
tgaacacatttgggaagtatgtaaattaaattaactagttggttggttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAAAATTGTGGCGGAGTACTACCCAGGAAGGCTATGCAAAGCGTTTGTCAT
aattaac putative branch site (score: 2)
aagtatgtaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacattgttaaactcaatttaaccataagctataatttaaaggttgaacacatttgggaagtatgtaaattaaattaactagttggttggttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAAAATTGTGGCGGAGTACTACCCAGGAAGGCTATGCAAAGCGTTTGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - -aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt