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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatttgaggaaaagtcagaaaggatcatttttaattttttatgacaagttattgagatgaataatgatttgtgtatatttttatgttatatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTAATTTCCTAGACGACCTAATAATTATTATTTA

Basic information

species Glycine max
transcript GLYMA20G28320.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721633|gb|BW671748.1|BW671748
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCC
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCC
EST: gi|16996150|gb|BM085522.1|BM085522
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|209705549|gb|BW683579.1|BW683579
EST:     CGCCTTTCA-GATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATG
genomic: CGCCTT-CAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATG
EST: gi|208257615|gb|GE055294.1|GE055294
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGACGGGAAA-GAAATGGG
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCG-CGGGAAAAGAAATGGG
EST: gi|6566982|gb|AW234609.1|AW234609
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|21994650|gb|BQ786178.1|BQ786178
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAAT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAAT
EST: gi|10231362|gb|BE800250.1|BE800250
EST:     ACGCCTTCAAGATCGCGCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAA
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAA
EST: gi|21887301|gb|BQ740514.1|BQ740514
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGNGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|10847500|gb|BF070178.1|BF070178
EST:     ACGCCTTCAAGATCGCCCTTGACACTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGGTCGCAATATTGCCGC
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGC
EST: gi|5770593|gb|AI973767.1|AI973767
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGCTCGCAATATTGCCGCGGGACAAGANATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|5606395|gb|AI900549.1|AI900549
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGATATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|213616525|gb|DB965558.1|DB965558
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATG
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATG
EST: gi|17519365|gb|BM188407.1|BM188407
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATT
EST: gi|10239012|gb|BE807900.1|BE807900
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTTGATGACAGCGTTCGCAATATTGCCGCGGTAAAGAGAA
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAA-AGAA
EST: gi|22521852|gb|BU080663.1|BU080663
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|8284673|gb|BE022215.1|BE022215
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|17519396|gb|BM188438.1|BM188438
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCG
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCG
EST: gi|13252755|gb|BG363658.1|BG363658
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|7233996|gb|AW569337.1|AW569337
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATT
EST: gi|8284665|gb|BE022287.1|BE022287
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|16347489|gb|BI973084.1|BI973084
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGNCGTACG                         TTATTTCCGGATGACAGC
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGC
EST: gi|15815384|gb|BI787659.1|BI787659
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|213607296|gb|DB957132.1|DB957132
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGG
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGG
EST: gi|192330976|gb|FK021675.1|FK021675
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|209708873|gb|BW661813.1|BW661813
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGC
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGC
EST: gi|5770742|gb|AI973916.1|AI973916
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGNGAAAAGAAATGGGT
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGT
EST: gi|192305012|gb|FG996130.1|FG996130
EST:     ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACG                         TTATTTCTGGATGACAGCGTTCGCAATATTGCCG
genomic: ACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGgtaagacaag ... tatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagttattgagatgaataatgatttgtgtatatttttatgttatatattgcagTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTAATTTCCTAGACGACCTAATAATTATTATTTA
             atgaataatgatttgt  TA-rich tract