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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCATTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtaagtttattatttctcacatacttgcatttcttccatttataatttgtttttaagttcttatttttatgcaaatgagcatgcatttacttgtatttac...

Basic information

species Glycine max
transcript GLYMA20G20890.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G20890.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g43030.1 (Oryza sativa), 5'ss of exon 12
-AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCATTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtaagtttattatttctcacatacttgcatttcttccatttataatttgtttttaagttcttatttttatgcaaatgagcatgcattta---cttgtatttac
 |  |   ||  || |||||||| ||||||||||| |||||||| ||||| ||| | |||||| | |||||||||||||||||||| | || | | || |||||||     | |   ||  |||  || || |  |    |    ||  |     |   ||| || || |     || |  |      |    || | |   | 
AAAACATACC-TAAGTGGCATGTCTATGTGACTGGACATAGTTTAGGTGGAGCACTAGCAACCCTTCTTGCTCTTGAACTTTCATCAAGTCTAATGGCCAAgtaagaa-gctctgaatctgatatctg-atcttatttgctggatatgagaggaaagactctcatattgaaatttattaagacaggggtgaggctcgaaccca-

upper sequence: GLYMA20G20890.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCATTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtaagtttattatttctcacatacttgcatttcttccatttataatttgtttttaagttcttatttttatgcaaatgagcatgcatttacttgtatttac
||       | ||||||||||||||||||||||||||||| |||||||| ||||| || ||  |  | ||||| |||||||| || |  |||||||| ||||||||   ||        | | ||   |  | |  |  | |  |   |    | | |    ||||  |    | |     ||   ||  | |       
AGCGTGAAGATAAATGGCATGTTTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTCGTCCAGCCAATTAGCTAAgtaagtactttgagaactcccttctcctacatatcaccctgacgacaagcagcttaatgggcattta-acatgatt---tgtgtgcttgttag-------

upper sequence: GLYMA20G20890.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 6
AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCATTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtaagtttattatttctc------acatacttgcatttcttccatttataatttgtttttaagttcttatttttatgcaaatgagcatgcatttacttgtatttac
||  ||  | |||||||||||| |||||||||||||||||||| ||||||||||| || ||| | ||||| ||||| |||||||| | |||||| ||||||| ||||  || | | |       |||| |||   | | || | |     ||| |||| |     |  | ||||       |   | |  |||   |  |      
AGATGCAGCTCAAATGGCATGTGTATGTGACTGGTCATAGTTTAGGTGGTGCATTAGCCACCCTTCTTGCGCTTGAGCTTTCATCAAGTCAATTGGCAAAgtgagttctttctctttttagtttacatgcttaagtgttttgcttcctccattcgtttatggtggccaacttttggtt---ttctcctaaattctttcattcc---