1 5' 3' | 2 5' 3' |
TGACATGATTGCTCTTTCTTTTGTTCGAAAAGGTTCTGACCTGGTGGAAGTCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAGgtatgccgtgctgcattcccttttttggaaaatataagtgattccagatctggttaaaaagtgatagtgttctgcattggttatgatatcctttgagatg...
species | Glycine max |
transcript | GLYMA20G02980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAEST: gi|17519128|gb|BM188170.1|BM188170
genomic: ATGCTCATGTCTAAGgtatgccgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
EST: TCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAEST: gi|193708185|gb|FK642029.1|FK642029
genomic: TCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAGgtatgccgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
EST: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGGTGAAATCCTTGCAAATTCA
genomic: TCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAGgtatgccgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACATGATTGCTCTTTCTTTTGTTCGAAAAGGTTCTGACCTGGTGGAAGTCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAGgtatgccgtgctgcattcccttttttggaaaatataagtgattccagatctggttaaaaagtgatagtgttctgcattggttatgatatcctttgagatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaata