Sequence
atgc intronic sequence ATGC exonic sequence...tttcacataaaaattaattaaaatcataataatcttaaatcatataataatttctcccaaaaaagagcattttaacatgaaattgatgttggaaatgcagGTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATGGGAGCCTCAAATAACACGTGCACAATAAGAGGTCTTATAGCCGCCATGT
Basic information
species | Glycine max |
transcript | GLYMA20G02770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02770.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0042g01100.t01 (Vitis vinifera), 3'ss of exon 1
--tttcacataaaaattaattaaaatcataataatcttaaatcatataataatttctcccaaaaaagagcattttaacatgaaattg-atgttggaaatgcagGTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATGGGAGCCTCAAATAACACGTGCACAATAAGAGGTCTTATAGCCGCCATGT
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attcatttttctacctctcttagtttaattttaattttaattaaactttgaaatt---taaaagcatgacatgactgcactaaattatattgtcggtatgcagGTGCTTGAACTGGGAATTGTGGTTCATTCAATAGTGATAGGGCTCTCAATGGGAGCCTCAAACAACACTTGCACAATAAAGCCTCTTGTGGCAGCCCTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323952|gb|FK018658.1|FK018658EST: AGATGGATGGCAAAGAGTCGCAGCTTCTACGTTATCGTGTTGTTGCCATG GTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATG
genomic: AGATGGATGGCAAAGAGTCGCAGCTTCTACGTTATCGTGTTGTTGCCATGgtaagattgt ... ggaaatgcagGTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATG
EST:
gi|151413188|gb|EV282996.1|EV282996EST: AGATGGATGGCAAAGAGTCGCAGCTTCTACGTTATCGTGTTGTTGCCATG GTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATG
genomic: AGATGGATGGCAAAGAGTCGCAGCTTCTACGTTATCGTGTTGTTGCCATGgtaagattgt ... ggaaatgcagGTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataatttctcccaaaaaagagcattttaacatgaaattgatgttggaaatgcagGTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATGGGAGCCTCAAATAACACGTGCACAATAAGAGGTCTTATAGCCGCCATGT
attttaacatgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcacataaaaattaattaaaatcataataatcttaaatcatataataatttctcccaaaaaagagcattttaacatgaaattgatgttggaaatgcagGTATTAGAACTTGGAATTATTGTTCATTCAGTGGTGATAGGACTTGGCATGGGAGCCTCAAATAACACGTGCACAATAAGAGGTCTTATAGCCGCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt