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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGACCGGGGGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcattatatgtgcatctgcctgttactgcttagggtttcaaaggtcttgaacttaggaggattattctttcatgcttcaagatcattagtaaata...

Basic information

species Glycine max
transcript GLYMA20G02720.5
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02720.5 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01660.t01 (Vitis vinifera), 5'ss of exon 4
GTTCTGGACCGGGGGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcattatat------gtgcatctgcctgttactgcttagggtttcaaaggtcttgaacttaggaggattattctttcatgcttcaagatcattagtaaata
||||| ||| | ||||||||||||||||||||||| || || ||| | || |||||| | ||||||||| | |   | | |      || |||||   |||       | | |||       ||| |||||||  |    |  ||| | |  ||||||     ||| |     
GTTCTAGACAGAGGGGAAAAGATAGAGCTTCTGGTGGATAAGACTCATAACCTTCATGAACAGgtcagtacttttctctttctcgctgtccatctatttgtcttcatct-gtgttcactgattctggaacttaaca---cttctctatga-acttcaac-cggttaatc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014462|gb|CX701204.1|CX701204
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193378650|gb|FK343843.1|FK343843
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATT
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATT
EST: gi|193488537|gb|FK454442.1|FK454442
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193412740|gb|FK376963.1|FK376963
EST:     AACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207803764|gb|GD772205.1|GD772205
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         ACA-AAGACTTCAGGAATTCTGGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGG
EST: gi|207694792|gb|GD677967.1|GD677967
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208312055|gb|GE109879.1|GE109879
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208066372|gb|GD863091.1|GD863091
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208293959|gb|GE090782.1|GE090782
EST:     CTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: CTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|151401881|gb|EV271694.1|EV271694
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208135982|gb|GD936281.1|GD936281
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208300087|gb|GE097206.1|GE097206
EST:     TTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: TTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207683974|gb|GD667447.1|GD667447
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         G
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcag-
EST: gi|207683974|gb|GD667447.1|GD667447
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         G
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcag-
EST: gi|193420459|gb|FK390466.1|FK390466
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207825578|gb|GD797289.1|GD797289
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|192331324|gb|FK021021.1|FK021021
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193390976|gb|FK353760.1|FK353760
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGA
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGA
EST: gi|207795290|gb|GD764453.1|GD764453
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193333395|gb|FK297409.1|FK297409
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208119999|gb|GD918380.1|GD918380
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207681989|gb|GD662512.1|GD662512
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207755967|gb|GD728000.1|GD728000
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208072048|gb|GD871506.1|GD871506
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208292853|gb|GE094633.1|GE094633
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         --ACAAGACTTCAGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGG
EST: gi|193724016|gb|FK658802.1|FK658802
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTC
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTC
EST: gi|192327642|gb|FK021319.1|FK021319
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208165503|gb|GD961615.1|GD961615
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGG
EST: gi|7285239|gb|AW597726.1|AW597726
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207843079|gb|GD815589.1|GD815589
EST:     AAGATAGAGCTTCTGGTTGACTAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAGATAGAGCTTCTGGTTGAC-AAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193406482|gb|FK371787.1|FK371787
EST:     ACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: ACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208148135|gb|GD949737.1|GD949737
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGG
EST: gi|58015276|gb|CX702018.1|CX702018
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208294512|gb|GE094303.1|GE094303
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193493629|gb|FK458811.1|FK458811
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193426410|gb|FK386581.1|FK386581
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208119998|gb|GD918379.1|GD918379
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193466757|gb|FK432136.1|FK432136
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193515311|gb|FK472873.1|FK472873
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193711341|gb|FK643908.1|FK643908
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|7639920|gb|AW734232.1|AW734232
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193474159|gb|FK441934.1|FK441934
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208074064|gb|GD870347.1|GD870347
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAA
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAA
EST: gi|193307901|gb|FK271545.1|FK271545
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208214183|gb|GE014572.1|GE014572
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208025885|gb|GD824353.1|GD824353
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193631355|gb|FK583732.1|FK583732
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCG
EST: gi|193336633|gb|FK304483.1|FK304483
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207801237|gb|GD773349.1|GD773349
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTACAGGAATTCTGGGAC
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTT-CAGGAATTCTGGGAC
EST: gi|208143983|gb|GD941586.1|GD941586
EST:     AAGATAGAGCTTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAGATAGAGC-TTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208170928|gb|GD969267.1|GD969267
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATT
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATT
EST: gi|193642400|gb|FK592034.1|FK592034
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAA
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAA
EST: gi|207714687|gb|GD695969.1|GD695969
EST:     TGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAATATGTGGCTG
genomic: TGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193720164|gb|FK655308.1|FK655308
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA----A                         GCACAAGACTTCAGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGG
EST: gi|193385164|gb|FK352318.1|FK352318
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208087131|gb|GD887179.1|GD887179
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208252227|gb|GE046603.1|GE046603
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACC-GG---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208074041|gb|GD872018.1|GD872018
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207764891|gb|GD737138.1|GD737138
EST:     AAAGATAGAGCTTCCGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTC
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTC
EST: gi|208133105|gb|GD928728.1|GD928728
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGG
EST: gi|193698400|gb|FK641557.1|FK641557
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAA
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAA
EST: gi|207704382|gb|GD686625.1|GD686625
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208174145|gb|GD968624.1|GD968624
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208183980|gb|GD983686.1|GD983686
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAAT
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAAT
EST: gi|193536950|gb|FK492332.1|FK492332
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207778255|gb|GD748398.1|GD748398
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGG
EST: gi|193583891|gb|FK542867.1|FK542867
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193406243|gb|FK373480.1|FK373480
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTC
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTC
EST: gi|193669026|gb|FK614048.1|FK614048
EST:     AAGGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AA-GATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193677615|gb|FK616217.1|FK616217
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAAT
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAAT
EST: gi|193534096|gb|FK489867.1|FK489867
EST:     TAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCA                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: TAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208178812|gb|GD975293.1|GD975293
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208140236|gb|GD934816.1|GD934816
EST:     CTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: CTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208310339|gb|GE107673.1|GE107673
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACC-GG---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193401305|gb|FK367532.1|FK367532
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|208273061|gb|GE068373.1|GE068373
EST:     CTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: CTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|193496423|gb|FK459013.1|FK459013
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATG
EST: gi|208305751|gb|GE109136.1|GE109136
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAA
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAA
EST: gi|208200608|gb|GD995167.1|GD995167
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-G---                         GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTGGCTG
EST: gi|207756135|gb|GD727034.1|GD727034
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGG-CA                         -CA-A-GACTTCAGGAATT
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcatt ... tttgaggcagGCACAAGACTTCAGGAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGGACCGGGGGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGGTCAgttcatcattatatgtgcatctgcctgttactgcttagggtttcaaaggtcttgaacttaggaggattattctttcatgcttcaagatcattagtaaata

- - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - GAGCTT