Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaatttgtgacatgtgaacttgctaatgctgaatttgttgtgatttgtgagaagatttatatgctcttgtctatttgcttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGATAAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGATGTC

Basic information

species Glycine max
transcript GLYMA20G02720.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02720.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g01660.t01 (Vitis vinifera), 3'ss of exon 2
gtattgaatttgtgacatgtgaacttgctaatgctgaatttgttgtgatttgtgagaagatttatatgctcttgtctatttgcttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGATAAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGATGTC
|||||   ||| |||  |    |     |         || ||||   ||| |        |||||    ||  |   | |  |||||| || || || |||||||| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||||| ||| 
gtattct-tttctgatttagagagacatt---------ttggttggattttat-------cttatagttgctgataagtgtctttgttgcagTTCAAAATTGAAGGAACACATGCAGTACTGTGTTGATCATCCCGAGGAGATAAGCAAGCTTGCGAAGGTGAAAGATCAGGTTTCAGAAGTTAAAGGTGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207772930|gb|GD745440.1|GD745440
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193372428|gb|FK338739.1|FK338739
EST:     GG-GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207776671|gb|GD748733.1|GD748733
EST:     GG-GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208058447|gb|GD857358.1|GD857358
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207701985|gb|GD683859.1|GD683859
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193457946|gb|FK424118.1|FK424118
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATG
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATG
EST: gi|193377852|gb|FK339710.1|FK339710
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193528449|gb|FK483965.1|FK483965
EST:     CGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: CGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193510438|gb|FK470310.1|FK470310
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208224126|gb|GE022627.1|GE022627
EST:     GGAAAGGCAGTCTAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAG-C-AACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207827815|gb|GD797510.1|GD797510
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208116414|gb|GD914501.1|GD914501
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193356915|gb|FK322281.1|FK322281
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACT
EST: gi|207688588|gb|GD673291.1|GD673291
EST:     GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCAT
genomic: GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCAT
EST: gi|207683867|gb|GD666626.1|GD666626
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208117825|gb|GD916807.1|GD916807
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208130696|gb|GD932907.1|GD932907
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193478446|gb|FK446199.1|FK446199
EST:     GGGGAAAGGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGCGTTGAGCATCCTGAAGAGAT
genomic: GCGGAAA-GGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193306430|gb|FK271465.1|FK271465
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208275191|gb|GE068011.1|GE068011
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208185188|gb|GD981590.1|GD981590
EST:     GG-GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193579074|gb|FK535842.1|FK535842
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193731286|gb|FK664412.1|FK664412
EST:     CGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: CGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208036015|gb|GD833020.1|GD833020
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193391403|gb|FK356050.1|FK356050
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208167856|gb|GD965998.1|GD965998
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208122827|gb|GD923197.1|GD923197
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207736623|gb|GD711326.1|GD711326
EST:     GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193369992|gb|FK337674.1|FK337674
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193673772|gb|FK619397.1|FK619397
EST:     GGGGAAAGGCAGCAACCGTGGCTGCGAAACAGCCTGAGCAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GCGGAAAGGCAGCAACCGTGGCTGCG-AACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207725770|gb|GD700988.1|GD700988
EST:     GG-GG-AAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193370254|gb|FK336788.1|FK336788
EST:     AGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: AGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208243075|gb|GE041919.1|GE041919
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207716506|gb|GD699660.1|GD699660
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|207690638|gb|GD672094.1|GD672094
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|15337556|gb|BI498212.1|BI498212
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193727866|gb|FK664216.1|FK664216
EST:     GCGGAAAGGCAGCAACCCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GCGGAAAGGCAGCAA-CCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193627736|gb|FK575356.1|FK575356
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTT
EST: gi|193668287|gb|FK609305.1|FK609305
EST:     GGAAAGGCAGTCTAACCGTGGTCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAG-C-AACCGTGG-CTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193468773|gb|FK431437.1|FK431437
EST:     GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193305526|gb|FK269987.1|FK269987
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193466059|gb|FK429786.1|FK429786
EST:     GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208332404|gb|GE128669.1|GE128669
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208132800|gb|GD927807.1|GD927807
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGA
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGA
EST: gi|193420851|gb|FK390942.1|FK390942
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208259647|gb|GE058039.1|GE058039
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193377525|gb|FK340167.1|FK340167
EST:     CGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: CGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193642855|gb|FK592853.1|FK592853
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193593200|gb|FK545760.1|FK545760
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208068711|gb|GD862767.1|GD862767
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193553371|gb|FK509994.1|FK509994
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193578085|gb|FK537095.1|FK537095
EST:     GG-GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193303968|gb|FK270781.1|FK270781
EST:     GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208086116|gb|GD879346.1|GD879346
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCA
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCA
EST: gi|208189875|gb|GD987779.1|GD987779
EST:     GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|193463942|gb|FK428300.1|FK428300
EST:     GGGGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACGTGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGCGGAAAGGCAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
EST: gi|208256638|gb|GE051293.1|GE051293
EST:     GGAAAGGACAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGG                         GTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT
genomic: GGAAAGG-CAGCAACCGTGGCTGCGAACAGCCTGAACAAGGAATTCGGgtattgaatt ... cttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttgtgatttgtgagaagatttatatgctcttgtctatttgcttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGATAAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGATGTC
                                         tttgctt  CT-rich tract
                   aagatttatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgaatttgtgacatgtgaacttgctaatgctgaatttgttgtgatttgtgagaagatttatatgctcttgtctatttgcttgttgtagGTCTAAGTTGAAGGAGCACATGCAGTACTGTGTTGAGCATCCTGAAGAGATAAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGATGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG