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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtaaacttataaacaagtatgcttaccaaattgttatacttccaagTCCTACATCTTTTGTTACTTTTTCTAA

Basic information

species Glycine max
transcript GLYMA20G02710.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatttgtaaacttataaacaagtatgcttaccaaattgttatacttccaagTCCTACATCTTTTGTTACTTTTTCTAA
                            tgcttac  putative branch site (score: 2)
                                             tacttcc  putative PPT
     atttgtaaacttataa  TA-rich tract