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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttctctgtagtctataaagttggaacttggatgtttaaaatttaaatagtcagattttccagtggaggttgttaatttctgattgtccagGGGTGTAGGTTTCTTGAGATATTTTCAGCTGAAACAGTTGCTAAACTTTCTACTTGCATCTCCAATACTGTCTCTGGCACTTCGCTCAGAGTTGTCCATT

Basic information

species Glycine max
transcript GLYMA20G02450.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02450.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g00920.t01 (Vitis vinifera), 3'ss of exon 5
-------gtattttctctgtagtctataaagttggaacttggatgtttaaaatttaaatagtcagattttccagtggaggttgttaatttctgattgtccagGGGTGTAGGTTTCTTGAGATATTTTCAGCTGAAACAGTTGCTAAACTTTCTACTTGCATCTCCAATACTGTCTCTGGCACTTCGCTCAGAGTTGTCCATT--
       |||||   | ||| |      |  |  ||  || |   ||  |  | |   || |    |||  || ||    ||| |  ||| |  |  |  ||||| || |||||||||||||| || || || || ||||||| ||||||||| |||||||| |||||| ||||| | |||||  |||||   || ||||||  
tatacatgtattcattatgttgaaccatatataagattttaggcatt-gatgtgtttgtaatttt-tttgacattgaccattgatggttttttctcatttagGGGAGTGGGTTTCTTGAGATACTTCCAACTAAAGCAGTTGCCAAACTTTCTGCTTGCATCCCCAATATTGTCTTTAGCACTATGCTCA--ATTATCCATTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaatttaaatagtcagattttccagtggaggttgttaatttctgattgtccagGGGTGTAGGTTTCTTGAGATATTTTCAGCTGAAACAGTTGCTAAACTTTCTACTTGCATCTCCAATACTGTCTCTGGCACTTCGCTCAGAGTTGTCCATT
                                         ttctgat  putative branch site (score: 3)
     tttaaatagt  TA-rich tract