1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttaaaacttacaattcctccttttttcttattaaacaaatttctgattcatcaagatatattcctgtggctaattcaagttccttttaagtgatacagATTGATGTCCTCGAGGTTGATGGAGTCTATTATG
species | Glycine max |
transcript | GLYMA20G02350.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCTGGAATTAATGGATAGTATCAAGGAAATTGGTCTTCAAGTGCCT ATTGATGTCCTCGAGGTTGAATGGAAGTACTATTATGGTTTCTEST: gi|193495959|gb|FK461927.1|FK461927
genomic: AAGTTCTGGAATTAATGGATAGTATCAAGGAAATTGGTCTTCAAGTGCCTgtaaccactt ... agtgatacagATTGATGTCCTCGAGGTTGA-TGGA-GT-CTATTATGGTTTCT
EST: AAGTTCTGGAATTAATGGATAGTATCAAGGAAATTGGTCTTCAAGTGCCT ATTGATGTACCTCGAAGGTTGATGGAG
genomic: AAGTTCTGGAATTAATGGATAGTATCAAGGAAATTGGTCTTCAAGTGCCTgtaaccactt ... agtgatacagATTGATGT-CCTCGA-GGTTGATGGAG
tgattcatcaagatatattcctgtggctaattcaagttccttttaagtgatacagATTGATGTCCTCGAGGTTGATGGAGTCTATTATG
ggctaat putative branch site (score: 3)
aagatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaaacttacaattcctccttttttcttattaaacaaatttctgattcatcaagatatattcctgtggctaattcaagttccttttaagtgatacagATTGATGTCCTCGAGGTTGATGGAGTCTATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA