Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTCCGGCTGTCACCGCTATGAGGCTCATCAGCGCCTTGGACTCCCCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgttctgttaactcttttgtaaagtataggtgactcagattcatattctcagccgattgattttcgtttcacattttgcag

Basic information

species Glycine max
transcript GLYMA20G02350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02350.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g07760.1 (Oryza sativa), 5'ss of exon 4
GTTTCTCCGGCTGTCACCGCTATGAGGCTCATCAGCGCCTTGGACTCCCCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgttctgttaactcttttgtaaagtatag-gtgactcagattcatattctcagccgattgattttcgtttcacattttgcag
|||| || || |||||||||||||||||||| |||||||| || ||||| || ||||| |||||| | || || || || ||||| ||  |||||| ||   |  | |||  ||| ||    || |  ||  |   ||| |  |||  |  ||  ||||   |  |  ||   |||    ||| |||
GTTTTTCTGGATGTCACCGCTATGAGGCTCACCAGCGCCTAGGTCTCCCGACTATCCGCTGCAAAGTCCGTCGCGGGACGAAAGAAACACTAAGgtgagccca--tcttcctttagct----tgaacggtccactatgaatttgat--aatttgacagc-actcaagcttgaattcgttcttt-cag

upper sequence: GLYMA20G02350.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G007683_T02 (Zea mays), 5'ss of exon 4
GTTTCTCCGGCTGTCACCGCTATGAGGCTCATCAGCGCCTTGGACTCCCCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgttctgttaactcttttgtaaagtataggtgactcagattcatattctcagccgattgattttcgtttcacattttgcag
| ||||| || || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||| | ||||| || ||||| || ||  | |||  ||  |  |  |||  | | ||    |   |  | |   | |||       ||   || | |   || | |||  | |  ||        
GCTTCTCTGGATGCCACCGCTACGAGGCTCACCAGCGCCTTGGTCTCCCAACCATCCGCTGCAAAGTTCGCCGTGGGACAAAGGAAACACTGAGgcgag--agcaccttccttcagcttggattccatttttgaattacttg-----atgcactgaac---ttcagtttgctctttcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208268751|gb|GE072098.1|GE072098
EST:     ACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: ACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|151410335|gb|EV280150.1|EV280150
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGG---                         -CATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208157677|gb|GD955540.1|GD955540
EST:     GTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207708666|gb|GD690950.1|GD690950
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208214695|gb|GE012928.1|GE012928
EST:     CGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193539811|gb|FK493797.1|FK493797
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208064502|gb|GD863916.1|GD863916
EST:     CAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207794765|gb|GD764852.1|GD764852
EST:     GTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193314838|gb|FK281338.1|FK281338
EST:     GCCGGGGTACAAAAGAGACTTTAAGG-T-                         -CATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207762379|gb|GD734276.1|GD734276
EST:     GGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208161715|gb|GD962643.1|GD962643
EST:     TGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: TGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207807724|gb|GD778073.1|GD778073
EST:     CCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208194297|gb|GD992452.1|GD992452
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193554836|gb|FK515561.1|FK515561
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|254347054|gb|GR856724.1|GR856724
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208304223|gb|GE104318.1|GE104318
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208080357|gb|GD877147.1|GD877147
EST:     AAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: AAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|298194077|gb|HO040725.1|HO040725
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGG---                         -CATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207841020|gb|GD810233.1|GD810233
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208323360|gb|GE120545.1|GE120545
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193631227|gb|FK579586.1|FK579586
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGG---                         -CATCATCTGCGCTAAACATGTCATCATTTTANCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208318616|gb|GE112889.1|GE112889
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208123676|gb|GD924578.1|GD924578
EST:     TGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: TGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193312973|gb|FK279586.1|FK279586
EST:     ACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: ACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208077291|gb|GD876950.1|GD876950
EST:     CCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208279226|gb|GE076695.1|GE076695
EST:     GTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207769856|gb|GD742170.1|GD742170
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGG---                         -CATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207808156|gb|GD780129.1|GD780129
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207770246|gb|GD741412.1|GD741412
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207766271|gb|GD737801.1|GD737801
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193640359|gb|FK590994.1|FK590994
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207842071|gb|GD815915.1|GD815915
EST:     TACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: TACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|207779208|gb|GD754182.1|GD754182
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193530672|gb|FK484491.1|FK484491
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGG---                         -CATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208088648|gb|GD885686.1|GD885686
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208182790|gb|GD986920.1|GD986920
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193336762|gb|FK304528.1|FK304528
EST:     TACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: TACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|7234360|gb|AW569698.1|AW569698
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208195690|gb|GD993495.1|GD993495
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|298188808|gb|HO035501.1|HO035501
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGG---                         -CATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193536779|gb|FK492273.1|FK492273
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208329953|gb|GE129770.1|GE129770
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193698627|gb|FK635400.1|FK635400
EST:     CCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|208340859|gb|GE138303.1|GE138303
EST:     GTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193657552|gb|FK606759.1|FK606759
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193511373|gb|FK470826.1|FK470826
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193601441|gb|FK549416.1|FK549416
EST:     GCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193541616|gb|FK497044.1|FK497044
EST:     CGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193668840|gb|FK611076.1|FK611076
EST:     CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: CCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
EST: gi|193667231|gb|FK611387.1|FK611387
EST:     GGGTACAAAAGAGACTTTAA-G---                         GCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT
genomic: GGGTACAAAAGAGACTTTAAGGTTAgttaagatgt ... cattttgcagGCATCATCTGCGCTAAACATGTCATCATTTTATCATTCAAAGTTGGTACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTCTCCGGCTGTCACCGCTATGAGGCTCATCAGCGCCTTGGACTCCCCACCATCCGTTGCAAAATACGCCGGGGTACAAAAGAGACTTTAAGGTTAgttaagatgttctgttaactcttttgtaaagtataggtgactcagattcatattctcagccgattgattttcgtttcacattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA