Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaaacttaataaacacaattcacagctatatatcttctattccatattgttgttatgattaagttatcattgttattattgttgttgaatattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACAAGAAGATAACCTACACCATATTGGAGGGTGTCATGTTGAAGTACTATAA

Basic information

species Glycine max
transcript GLYMA20G02210.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404002|gb|EV273812.1|EV273812
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|209722596|gb|BW679845.1|BW679845
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|13790130|gb|BG652721.1|BG652721
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192316320|gb|FK010139.1|FK010139
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|213605393|gb|DB964588.1|DB964588
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192298978|gb|FG990348.1|FG990348
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192312778|gb|FK003990.1|FK003990
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192298433|gb|FG989169.1|FG989169
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192315861|gb|FK008571.1|FK008571
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|151398830|gb|EV268701.1|EV268701
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192322935|gb|FK016666.1|FK016666
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|151399932|gb|EV269803.1|EV269803
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGGAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|213606811|gb|DB961022.1|DB961022
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|208237468|gb|GE032564.1|GE032564
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192294607|gb|FG986456.1|FG986456
EST:     AGGTGAGTGGGATAAATCTGGCAGTATCAAAGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|208051923|gb|GD855518.1|GD855518
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192315279|gb|FK009165.1|FK009165
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|213594106|gb|DB961966.1|DB961966
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|27423956|gb|CA935476.1|CA935476
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192295208|gb|FG986927.1|FG986927
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192298269|gb|FG991731.1|FG991731
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|298168747|gb|HO009677.1|HO009677
EST:     AGGTGAGTGGGATAAACCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192313803|gb|FK011063.1|FK011063
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192332570|gb|FK025675.1|FK025675
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192312777|gb|FK003989.1|FK003989
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|193564372|gb|FK519221.1|FK519221
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTCGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|7235095|gb|AW570354.1|AW570354
EST:     TGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: TGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192297491|gb|FG989526.1|FG989526
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCCGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|151406220|gb|EV276035.1|EV276035
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192315860|gb|FK008570.1|FK008570
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
EST: gi|192315278|gb|FK009164.1|FK009164
EST:     AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATG                         GGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA
genomic: AGGTGAGTGGGATAAATCTGGCAATATCAAGGTGCTTACATTCGCTGATGgtaagttaaa ... tattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgttgttatgattaagttatcattgttattattgttgttgaatattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACAAGAAGATAACCTACACCATATTGGAGGGTGTCATGTTGAAGTACTATAA
        ttatgattaagttatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttaaacttaataaacacaattcacagctatatatcttctattccatattgttgttatgattaagttatcattgttattattgttgttgaatattatgtagGGGACACTGTTGAGACCTTAAAGGAGAGAGTTGATTTTGATGATGAAAACAAGAAGATAACCTACACCATATTGGAGGGTGTCATGTTGAAGTACTATAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG