1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attttcttggagtgctccttatgcaacaagttttgttgattttttttttgcctaattcatttgtttcatttataatcaatgcattaatccatctcttcagGTTGGCCTCATGCTTAGGGGAATGGGTTTCACGAAGAACACATCTATCTTTTTGGCATCTGGAAAAATATATAATGCTGAGAAAACAATGGCCCCACTAC
species | Glycine max |
transcript | GLYMA20G02130.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGGAGCAATCAGGATCAATTGGAAGTGTGCACTTACCCCATTAGAG GTTTGCCTCATGCTTTAGGGGAATGGGTTTCACGACGA-CACATTTATCCTEST: gi|7588749|gb|AW704538.1|AW704538
genomic: GTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtct ... atctcttcagGTTGGCCTCATGCTT-AGGGGAATGGGTTTCACGAAGAACACATCTATCTT
EST: GTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAG GTTGGCCTCATGCTTAGGGGAATGGGTTTCACGAAGAACACATCTATCTTT
genomic: GTCCAGGAGCAATCAGGATCAATGGGAAGTGTCCACTTACCCCATTAGAGgtaaatgtct ... atctcttcagGTTGGCCTCATGCTTAGGGGAATGGGTTTCACGAAGAACACATCTATCTTT
ttttgcctaattcatttgtttcatttataatcaatgcattaatccatctcttcagGTTGGCCTCATGCTTAGGGGAATGGGTTTCACGAAGAACACATCTATCTTTTTGGCATCTGGAAAAATATATAATGCTGAGAAAACAATGGCCCCACTAC
cattaat putative branch site (score: 3)
tccatctcttc CT-rich tract
taattcatttgtttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcttggagtgctccttatgcaacaagttttgttgattttttttttgcctaattcatttgtttcatttataatcaatgcattaatccatctcttcagGTTGGCCTCATGCTTAGGGGAATGGGTTTCACGAAGAACACATCTATCTTTTTGGCATCTGGAAAAATATATAATGCTGAGAAAACAATGGCCCCACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - tgctcct
- - - - - - - - - -tatgcaa
- - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatta