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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCGCTTGATTCCCTGCTTCAATCGCATTCTCATCGAGAAAATCGTCCCTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaatcccaccgttatttttagctttatttgaaattttgtttgtttgtttctctgtgtatcataaaattgtttcgataaatttatcggttaaaggaagtctttgtgtgtggttgttgaaacag

Basic information

species Glycine max
transcript GLYMA20G02110.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603309|gb|DB966596.1|DB966596
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|6846478|gb|AW348768.1|AW348768
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|51344417|gb|CO985150.1|CO985150
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|151405890|gb|EV275705.1|EV275705
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|151404939|gb|EV274753.1|EV274753
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|209718931|gb|BW657873.1|BW657873
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|254344098|gb|GR851008.1|GR851008
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|192312735|gb|FK005389.1|FK005389
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|10846435|gb|BF069332.1|BF069332
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|12773375|gb|BG238302.1|BG238302
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|120531245|gb|EH259378.1|EH259378
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|58023724|gb|CX710465.1|CX710465
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|31460804|gb|CD402832.1|CD402832
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|26269566|gb|CA820629.1|CA820629
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|19935362|gb|BQ080392.1|BQ080392
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|151394621|gb|EV264492.1|EV264492
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|213598855|gb|DB968326.1|DB968326
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|209708235|gb|BW678605.1|BW678605
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|15813437|gb|BI785712.1|BI785712
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|14991605|gb|BI317278.1|BI317278
EST:     CCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGGGGGTGGACCTGGATCACGTGACAAGGCG
genomic: CCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|298173940|gb|HO017276.1|HO017276
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|192310517|gb|FG999204.1|FG999204
EST:     CTCCCTCCAAAACCAGCGCCGGCATTATACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|261497100|gb|GT185168.1|GT185168
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|6566857|gb|AW234489.1|AW234489
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|7233074|gb|AW568424.1|AW568424
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|19935352|gb|BQ080382.1|BQ080382
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAATACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|192304929|gb|FG996089.1|FG996089
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCGCGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|214004465|gb|DB985564.1|DB985564
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|15662068|gb|BI699439.1|BI699439
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|16280507|gb|BI943998.1|BI943998
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|58020090|gb|CX706832.1|CX706832
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|209718932|gb|BW657874.1|BW657874
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|19052813|gb|BM731472.1|BM731472
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|209708236|gb|BW678606.1|BW678606
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|19269163|gb|BM885419.1|BM885419
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST: gi|151409016|gb|EV278824.1|EV278824
EST:     CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG                         CTTAATTCCGGTAAGGTGGTAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCGCTTGATTCCCTGCTTCAATCGCATTCTCATCGAGAAAATCGTCCCTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaatcccaccgttatttttagctttatttgaaattttgtttgtttgtttctctgtgtatcataaaattgtttcgataaatttatcggttaaaggaagtctttgtgtgtggttgttgaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA