Sequence
atgc intronic sequence ATGC exonic sequencegttttaaaaatcccaccgttatttttagctttatttgaaattttgtttgtttgtttctctgtgtatcataaaattgtttcgataaatttatcggttaaaggaagtctttgtgtgtggttgttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCGGGGAACTTGATTCCGGTGTCTGTGAAGGAAGGTGATCACGTGCTCTTGC
Basic information
species | Glycine max |
transcript | GLYMA20G02110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02110.2 (Glycine max), 3'ss of exon 1
lower sequence: AT1G14980.1 (Arabidopsis thaliana), 3'ss of exon 1
gttttaaaaatcccaccgttatttttagctttatttgaaattttgtttgtttgtttctctgtgtatcataaaattgtttcgataaatttatcggttaaaggaagtctttgtgtgtggttgttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCGGGGAACTTGATTCCGGTGTCTGTGAAGGAAGGTGATCACGTGCTCTTGC
| ||| || ||| | || | | | | || || || | |||| | ||| || ||| ||| ||||| || || || ||||||||||| ||||||||||||||| | || |||| ||||| ||||||||||| |||||||||||||| || || || | |
----------------------------------gtaaaagagctttgatttcacgatttgattcttctgattttcgcctcttagatctgaaaaataaa---catatttttgggtgattg------cagCTGAACTCAGGCAAGGTGATAGCTGTTGGACCTGGATCAAGGGATAAGGACGGGAAATTGATTCCGGTCTCTGTGAAGGAAGGCGACACTGTTCTTCTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14991605|gb|BI317278.1|BI317278EST: CCCGGAGAAGACCTCCCAG CTTAATTCCGGTAAGGTGATAGGGGGTGGACCTGGATCACGTGACAAGGCG
genomic: CCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
EST:
gi|12773375|gb|BG238302.1|BG238302EST: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAG CTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
genomic: CTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGgttttaaaaa ... gttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttcgataaatttatcggttaaaggaagtctttgtgtgtggttgttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCGGGGAACTTGATTCCGGTGTCTGTGAAGGAAGGTGATCACGTGCTCTTGC
ataaatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttaaaaatcccaccgttatttttagctttatttgaaattttgtttgtttgtttctctgtgtatcataaaattgtttcgataaatttatcggttaaaggaagtctttgtgtgtggttgttgaaacagCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCGGGGAACTTGATTCCGGTGTCTGTGAAGGAAGGTGATCACGTGCTCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA