1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgttttacttgaatcaattttataataagctgatagctgcatctgcatggcatcatgtcatattgctatgcttcttattatagtctttatattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGGTTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGTCGATC
species | Glycine max |
transcript | GLYMA19G42100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTTCAATGCGGACATCAATTTCATCTCG ATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTEST: gi|254317454|gb|GR826438.1|GR826438
genomic: CAAGCTTCAATGCGGACATCAATTTCATCTCGgtatgtattt ... tattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
EST: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCG ATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTEST: gi|192333279|gb|FK026160.1|FK026160
genomic: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCGgtatgtattt ... tattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
EST: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCG ATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
genomic: CGGTGATCGATCCTGGGCCAAGCTTCAATGCGGACATCAATTTCATCTCGgtatgtattt ... tattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATT
gcatggcatcatgtcatattgctatgcttcttattatagtctttatattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGGTTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGTCGATC
tctttat CT-rich tract
ttcttattatagtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttacttgaatcaattttataataagctgatagctgcatctgcatggcatcatgtcatattgctatgcttcttattatagtctttatattgttcagATTGCATTGGCTCAGCCTTCAATATAAAGGGGGCAATGCAGTGCCCCAATTGTCGTAAGGTTGAAAAAGGTCAGTGGCTTTATGCTAATGGTTGTCGATC
- - - - - - - - - - - - - - - - - tagctgc
- - - - - - - - - - - - - - - - - - - - - - -gcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg