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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGGCTTCAGCCGACGACGTCGTTGCACTCACAGAGGAAACCTTCGAAAACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcgaatcgcgtttctctcatctcacgcgcctccattttattatttccattacaatgaattatgaaatgcaaattttttttttttttttgttcgtttcag

Basic information

species Glycine max
transcript GLYMA19G41690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41690.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g23740.1 (Oryza sativa), 5'ss of exon 1
CATCGGCTTCAGCCGACGACGTCGTTGCACTCACAGAGGAAACCTTCGAAAACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcgaatcgcgtttctctcatctca-cgcgcctccattttattatttccattacaatgaattatgaaatgcaaattttttttttttttttgttcgtttcag
| |  ||    | |||||||||||| || ||||| |||   |||||||| || ||||| ||| |||| |||| ||| ||||| ||||| ||||| ||||||| ||  |   || | ||| ||||  |  | | |  |   |||    |   ||   |    |    |  ||   |    |   |  |   |  |  | ||      
CGTTCGCCGACGGCGACGACGTCGTCGCCCTCACGGAGTCCACCTTCGAGAAGGAGGTCGGCCAGGACCGCGGCGCCCTCGTCGAGTTCTACGCGCCCTGgttcgttctcgtcccctttgtctcgccagatccctgcgtaattcggctggatcgggtcgggtcggatcggatccgtgtgtgggtcgtgaatagtgatgcg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196646|gb|HO041389.1|HO041389
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193529334|gb|FK487801.1|FK487801
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|151396704|gb|EV266577.1|EV266577
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193495658|gb|FK462858.1|FK462858
EST:     A-CGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGC
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGC
EST: gi|193655953|gb|FK606625.1|FK606625
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193530156|gb|FK486173.1|FK486173
EST:     AGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|7146459|gb|AW508381.1|AW508381
EST:     TGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: TGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|15812329|gb|BI784604.1|BI784604
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193709902|gb|FK642152.1|FK642152
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGC
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGC
EST: gi|7925424|gb|AW831389.1|AW831389
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|209699181|gb|BW664358.1|BW664358
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193530323|gb|FK483722.1|FK483722
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|298164091|gb|HO013736.1|HO013736
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|192330240|gb|FK019835.1|FK019835
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|192299182|gb|FG990454.1|FG990454
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|18692859|gb|BM521707.1|BM521707
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193519806|gb|FK476299.1|FK476299
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAG
EST: gi|193728746|gb|FK667710.1|FK667710
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
EST: gi|193546883|gb|FK500526.1|FK500526
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGC
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGC
EST: gi|151410365|gb|EV280180.1|EV280180
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG
genomic: AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTTGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCCCCGGAGTACGAACAGCTCGGAGCGAG