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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtttccccaatcgtttaccttttttttttattattattataagagttggttttgcag

Basic information

species Glycine max
transcript GLYMA19G41670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g23620.1 (Oryza sativa), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttcctttt--------ttttttttgtttcccc---aatcgtttaccttttt---tttttattattattataagagttggttttgcag--------------------------------------
 || |||||||| ||||||||||||||||||||||||||| | ||| | |||||||| ||||| ||||| || ||| | || ||||||||||| || |||||    |  | |  ||        | | | |    |||||   || |    | ||       |   | |   | |  |  ||  || |    | |                                      
GCTCGCGTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTCAAGGACGAGgtaccctcctacccttcgcccggatctctctcccctcccccacaaccccagatctgacccgatccatttccctttcgttggatctgatccgtctgtgtttgtgcgtgcgtgcgtgcgtgggcggatggtgcag

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g15010.1 (Oryza sativa), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtttccccaatcgt-ttaccttttttttttattattattataagagttggttttgcag
 || || ||||| ||||||||||||||||||||||||||| | ||| | |||||||| ||||| ||||| || ||| | || ||||||||||| || |||||   ||   ||   |   |   |   ||   | | ||  |   ||  ||  || | |||  | |  |  || |  | ||||
GCTGGCCTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTCAAGGACGAGgtag-gtcgcccggatcgatcgatcgatcgagatttgtactgatttggttggttctgatttgtgttgggatttgggt-gcag

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g37360.1 (Oryza sativa), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgtttt-------gttttccttttttttttttgtttccccaatcg-tttacctttt--ttttttattattattataagagtt-ggttttgcag--------
 || |||||||| ||||||||||||||||||||||||||| | ||| | |||||||| ||||| ||||| || ||  | || ||||||||||| || ||||||         ||||   |  |||| ||||  ||   || ||| || | || ||  || ||   |  | | ||  |  || | ||  |  |        
GCTGGCGTCGCTGGGGCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTCCTCCACATGCTCAAGGACGAGgttcgccacgaagtttctttccttttgttttaattgagcagtcgattcatctgttggttgttaggtgatctgatgcggtttcgattgggttggattatgc

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G038356_T01 (Zea mays), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttt--tgttttccttttttttttttgtttccccaatcgtttacctttttttttta-ttattattataagagttggttttgcag-------
 || || || ||||| |||||||||||||||||||||||| | ||| | |||||||| ||||| ||||| || ||  |||| ||||||||||| || |||||         |||    | |  ||    |  || ||| |  | ||  ||   |    |    | ||  | | | |||| |          
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCCAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgtacgccaccgtcccccgtctgcttccggtatcctatcctagatctgcttccctgggcttgcctgatccgtgcttgtttcgatcgttgcag

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G122666_T01 (Zea mays), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttt-----------tttttttttgttt-ccccaatcgtttaccttttttttttattattattataagagttggttttgcag------------
 || || ||||| |||||||||||||||||||| |||||| | ||| | |||||||| ||||| ||||| || ||| | || |||||||| || || |||||  | | | |||              ||||  |||      ||| || | ||   |||    |||       |    ||  |||||     |            
GCTGGCATCGCTTGGGCTGTGGCAGAAGGAGGCTAAGATCCTCTTCCTTGGCCTCGACAACGCCGGCAAGACCACCCTCCTCCACATGCTGAAGGACGAGgtcctctctacctccgacatccgccccttttccttgcgaattccagtcttatatgctttcgacttaacggggattcctgatctggttcgattgggttcatcgcag

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G086636_T03 (Zea mays), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgtt--ttgt--tttccttttttttttttgtttccccaatcg---tttaccttttttttttattattattataagagttggttttgcag------------------------------
 || || || ||||| ||||||||||||||||| |||||| | ||| | |||||||| ||||| ||||| || ||  |||| ||||||||||| || ||||||  | |   |  ||    |  ||   || |||   |||       |||   ||   |  |    |||    |  |  ||||  |                                
GCTGGCCTCCCTCGGCCTGTGGCAGAAGGAGGCGAAGATCCTCTTCCTCGGCCTCGACAACGCCGGCAAGACCACGCTGCTCCACATGCTCAAGGACGAGgttcgtcgccgtcccccgcctgcttcccgtatcctagatctgaccgcacccgattggatcctgtccatttctggcttccgtttgcctttctgatccgttcttgtctcgatcgctgcag

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S183_17V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtt--tccccaatcgtttaccttttttttttatta-ttattataagagttggttttgcag----------------
 || ||  |  | ||| | ||||||||||||||||| ||||| ||| | ||| | || ||||| ||||| || || ||||| ||||||||||| ||||||||   |  | | |||  |      | |  |     || |    |   |||  || |    ||   |      | || |||   |                
GCTTGCCACCTTAGGGTTATGGCAGAAGGAGGCCAAAATCTTGTTCCTCGGCTTGGACAACGCCGGCAAGACCACGTTGCTGCACATGCTCAAGGATGAGgtgagggctccgtttgctcccaaggatagttagagatggagagcgggtttcattcacgggttgggactgtgctgggctttcttgtttattgttaaatttc

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S7_338V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtttcccca----------atcgtttaccttttttttttattattattataagagttggttttgcag---------
 || ||| |  | ||||| |||||||||||||| || ||| | ||| | ||| | |||||||| ||||| || || ||||| ||||||||||| ||||||||   |  |  |||      |           |          |  |    |      ||| ||      ||   | ||||   | ||| |         
GCTTGCGACCTTAGGGCTATGGCAGAAGGAGGCGAAAATCCTGTTCCTCGGCTTGGATAACGCGGGCAAGACCACGTTGCTACACATGCTCAAGGATGAGgtaagggctggcttaccagctagaaggaagaaaggaaggaaggaaggagggcagggaatttataaacggcttgagatagtttcgtgtgctgtgttgtttc

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S10_357V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttt-tgtttccccaatcgtttaccttttttttttattattattataagagttggttttgcag------------------
||| |||    | ||||||||||||||||||||||| ||| | ||  |||| ||||| || |||||||| |||||  | || ||||||||||| |||||||||    | || ||| | ||||  |   | |    ||  || |  ||     ||  ||   |   ||   || |  |                       
TCTTGCGAGCATAGGGCTGTGGCAGAAGGAGGCCAAAATCCTGTTTCTGGGTCTCGACAATGCTGGCAAGACTACTCTTCTGCACATGCTCAAGGATGAGgttagactctcttttctgttttgattcctgcttggtcaatttcaattcgcggttgatagcgtaccaaattttcgcctctagaatcgataacgtatccgtt

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ35155 (Selaginella moellendorffii), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttt-tgttttccttttttttttttgtttccccaatcgttta---ccttttttttttattattattataagagttggttttgcag----------------------
  | ||  |||||||||||||||||||||||||||||||  | ||| | || ||||| || || || ||||| ||  | || ||||||||||| || |||||   || |||||   ||    |     |||       | |    ||   | | |       | || |     ||  | ||                          
GTTGGCCACGCTCGGGCTGTGGCAGAAGGAGGCCAAGATTCTCTTCCTAGGTCTCGACAATGCGGGGAAAACAACGCTTCTCCACATGCTCAAGGACGAGgtgagtggtttccagcttaccctagagctccatcgcgttctgaggccgcctctctcgcgcgctcttttggttttttttctttttttcttttctcgcaattcttccag

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtttccccaatcgtttaccttttttttttattattattataagagttggttttgcag
  |||||   || ||||||||||||||||||| ||||||||| ||| | || ||||| ||||| ||||| || ||  |||| ||||||||||| || |||||   |      | ||    |||  |   |    || |  | ||     ||                              
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaa-gcgaatttcttggaatttcctcctctaggtcatggatctggggattgcgcctgcgcag------------------

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtttccccaatcgtttaccttttttttttattattattataagagttggttttgcag
  |||||   || ||||||||||||||||||| ||||||||| ||| | || ||||| ||||| ||||| || ||  |||| ||||||||||| || |||||   |      | ||    |||  |  ||    || |  | ||     ||                              
CTTAGCGAGCCTAGGGCTGTGGCAGAAGGAGGGCAAGATCTTGTTCCTAGGGCTCGACAACGCCGGCAAGACGACGCTGCTACACATGCTCAAGGACGAGgtaa-gcgaatttcttggaatttcctcccctaggtcatggatctggggattgcgcctgcgcag------------------

upper sequence: GLYMA19G41670.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ24104 (Selaginella moellendorffii), 5'ss of exon 1
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttt-tgttttccttttttttttttgtttccccaatcgttta---ccttttttttttattattattataagagttggttttgcag-----------------
  | ||  |||||||||||||||||||||||||||||||  | ||| | || ||||| || || || ||||| ||  | || ||||||||||| || |||||   || |||||   ||    |   | |||       | |    ||   | | ||      | || |     || |||||                     
GTTGGCCACGCTCGGGCTGTGGCAGAAGGAGGCCAAGATTCTCTTCCTAGGTCTCGACAATGCGGGGAAAACAACGCTTCTCCACATGCTCAAGGACGAGgtgagtggtttccagcttaccctagatctccatcgcgttctgaggccgcctctcttgcgcgctcttttggttttttgttttcttttctcgcaattcttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31455997|gb|CD398025.1|CD398025
EST:     GCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCCGTATCCTACATCGGAGGAGTTGAGT
genomic: GCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|151402125|gb|EV271938.1|EV271938
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298178689|gb|HO024424.1|HO024424
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|105631949|gb|DW246256.1|DW246256
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|15200581|gb|BI424422.1|BI424422
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|19452693|gb|BM954103.1|BM954103
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|14125538|gb|BG789976.1|BG789976
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|192329186|gb|FK021144.1|FK021144
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|31310335|gb|CD395538.1|CD395538
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298163472|gb|HO012205.1|HO012205
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATCAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298187650|gb|HO034799.1|HO034799
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298191654|gb|HO039133.1|HO039133
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|14989914|gb|BI315587.1|BI315587
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|208055173|gb|GD851160.1|GD851160
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCAT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCAT
EST: gi|18040465|gb|BM308759.1|BM308759
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|151394103|gb|EV263974.1|EV263974
EST:     GCCTCGATAACGCTGGCAAAGCTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298170544|gb|HO019168.1|HO019168
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|16346948|gb|BI972543.1|BI972543
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|7232449|gb|AW567805.1|AW567805
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|5760121|gb|AI965484.1|AI965484
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|151395425|gb|EV265302.1|EV265302
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298198212|gb|HO039751.1|HO039751
EST:     GCCTCGATAACGCTGGCAGAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298184993|gb|HO030206.1|HO030206
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|192320073|gb|FK014157.1|FK014157
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|254337721|gb|GR845291.1|GR845291
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|21675324|gb|BQ627675.1|BQ627675
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|120493936|gb|EH222103.1|EH222103
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|192329185|gb|FK021143.1|FK021143
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|14126189|gb|BG790627.1|BG790627
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|213608980|gb|DB962906.1|DB962906
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|298183217|gb|HO028202.1|HO028202
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|15204445|gb|BI427213.1|BI427213
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|192322260|gb|FK014156.1|FK014156
EST:     GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
EST: gi|31308727|gb|CD393930.1|CD393930
EST:     GATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAG                         AGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT
genomic: GATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgtttt ... ggttttgcagAGATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCGGAGGAGTTGAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTAGCGTCGCTCGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACTACCTTGCTTCACATGCTCAAAGATGAGgttttgttttccttttttttttttgtttccccaatcgtttaccttttttttttattattattataagagttggttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG