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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatagagtcaaaatcttgtgctttcagttcttaaaattagaccttttgttcaatgattcaatcccagcagcatgtgattcgaatagatgcaataaaatgtctctgatagtgttttggttattcattgaccaaaatgactaatttaagtggtatattgacttaaaataacattacatctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCACAAGGAATCATTCTCG

Basic information

species Glycine max
transcript GLYMA19G37020.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332578|gb|FK025683.1|FK025683
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|192323686|gb|FK015992.1|FK015992
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|192332579|gb|FK025684.1|FK025684
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|16345184|gb|BI970779.1|BI970779
EST:     NNNGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|192328600|gb|FK023576.1|FK023576
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|8283505|gb|BE021064.1|BE021064
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|192328601|gb|FK023577.1|FK023577
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|192329516|gb|FK022208.1|FK022208
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
EST: gi|151393016|gb|EV262891.1|EV262891
EST:     AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTG                         CTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC
genomic: AACGCTCACAGTGGGTGGCAAGAGATTGAAATTGACGATTTGGGATACTGgtaatataga ... tctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgactaatttaagtggtatattgacttaaaataacattacatctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCACAAGGAATCATTCTCG
                                aaataac  putative branch site (score: 2)
                    tatattgacttaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatatagagtcaaaatcttgtgctttcagttcttaaaattagaccttttgttcaatgattcaatcccagcagcatgtgattcgaatagatgcaataaaatgtctctgatagtgttttggttattcattgaccaaaatgactaatttaagtggtatattgacttaaaataacattacatctgttgcagCTGGGCAGGAAAGGTTCAGGACTCTAAACAGTTCTTACTATAGAAAAGCACAAGGAATCATTCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA