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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGGTGGTGGATTGGGTCATGAGGCCATAGTGGAACCAGCTGGCCCTGATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattcttcttcttcttcttccttttcttttttctatttatgtgctttttttacctcttgtggcattcaaactttccttttttattttatcgctttc...

Basic information

species Glycine max
transcript GLYMA19G36960.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326530|gb|AW620328.1|AW620328
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|254319115|gb|GR828843.1|GR828843
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|192316243|gb|FK010104.1|FK010104
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|193514223|gb|FK468327.1|FK468327
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACC
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACC
EST: gi|11412406|gb|BF424417.1|BF424417
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|192312511|gb|FK004997.1|FK004997
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|21595577|gb|BQ610535.1|BQ610535
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|192302219|gb|FG995843.1|FG995843
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|213613833|gb|DB960882.1|DB960882
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|192324752|gb|FK016523.1|FK016523
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|26056188|gb|CA799102.1|CA799102
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|192316244|gb|FK010105.1|FK010105
EST:     ATTGTTTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|192302218|gb|FG995842.1|FG995842
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|13563097|gb|BG551317.1|BG551317
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|13563263|gb|BG551483.1|BG551483
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|254319116|gb|GR828844.1|GR828844
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
EST: gi|37995427|gb|CF807016.1|CF807016
EST:     ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG                         GTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAA