Sequence
atgc intronic sequence ATGC exonic sequence...tctctaatatttgttttatcttttggggtaatgctctttagaaagattatgtttttggcaaagagatgcagttaaacttattgccttcttgtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAACTTAAGATGCTTGGAAAGGTGAAGGCCTCTTTTCCTATATTATGTTTTT
Basic information
species | Glycine max |
transcript | GLYMA19G36960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36960.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g04840.t01 (Vitis vinifera), 3'ss of exon 2
tctctaatatttgttttatct-tttggggtaatgctctt-tagaaagattatgtttttggcaaagagatgcagttaaacttattgccttcttgtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAACTTAAGATGCTTGGAAAGGTGAAGGCCTCTTTTCCTATATTATGTTTTT
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-acattatatttgtcctagagatttatgggactgctttcgtggcatcactcttgcctttgtatgatcttggcatcaaattt-ctatttctgcatatgcacagGTATGGCCTATCCATATTGACATGAAATTTATGGAACCAGTTGGACGGGAGCTTAAGCTGCTTGGGAAG-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193514223|gb|FK468327.1|FK468327EST: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAG GTCTGGCCAATCCATGTTGACC
genomic: ATTGTCTCGTACCTGGCCAGAAAATGCCCATCCAATTACTTGGCCTCCAGgtttcattct ... gtttggacagGTCTGGCCAATCCATGTTGACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatgtttttggcaaagagatgcagttaaacttattgccttcttgtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAACTTAAGATGCTTGGAAAGGTGAAGGCCTCTTTTCCTATATTATGTTTTT
ttgccttcttgttt CT-rich tract
ttaaacttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctctaatatttgttttatcttttggggtaatgctctttagaaagattatgtttttggcaaagagatgcagttaaacttattgccttcttgtttggacagGTCTGGCCAATCCATGTTGACCTGAAGTTTTTGGAACCAGTTGGGCGAGAACTTAAGATGCTTGGAAAGGTGAAGGCCTCTTTTCCTATATTATGTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - -tttgggg
- - - - - - - - - - - - - - -aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcag