1 5' 3' |
...ttttaaatatatttattgtgttatagttcttggtctgttgatgtagttagttataaaccatccttcataaatctatgcttaggcacaccttgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGG
species | Glycine max |
transcript | GLYMA19G36950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAG GTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAEST: gi|15203649|gb|BI426417.1|BI426417
genomic: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGgttcgttgga ... tgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTA
EST: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAG GTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAEST: gi|9819903|gb|BE555346.1|BE555346
genomic: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGgttcgttgga ... tgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTA
EST: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAG GTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAEST: gi|9203505|gb|BE329729.1|BE329729
genomic: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGgttcgttgga ... tgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTA
EST: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAG GTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTA
genomic: TCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGgttcgttgga ... tgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTA
gttagttataaaccatccttcataaatctatgcttaggcacaccttgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGG
ataaatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaatatatttattgtgttatagttcttggtctgttgatgtagttagttataaaccatccttcataaatctatgcttaggcacaccttgcaatgcagGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - -gttcttg
- - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacacc