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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCATTACGCAAGCGACACTTTCTCCGATAACATCTCAAATCTCATTCAGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacccctttttcaattatttattttacatgttttctgccacttcgatttgtgttattccaattcctgtgattcaatcccgatccatgtgttcgt...

Basic information

species Glycine max
transcript GLYMA19G36900.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125795|gb|BG790233.1|BG790233
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|254313788|gb|GR831417.1|GR831417
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|193672721|gb|FK619805.1|FK619805
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|254313787|gb|GR831416.1|GR831416
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|209717209|gb|BW657678.1|BW657678
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|7146138|gb|AW508060.1|AW508060
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|213610650|gb|DB961125.1|DB961125
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|193590460|gb|FK544938.1|FK544938
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         ATTCGTGGCCCAACTTGTGCTAGGAGGCTT
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTT
EST: gi|298166562|gb|HO010001.1|HO010001
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|13480379|gb|BG509722.1|BG509722
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|21256142|gb|BQ453030.1|BQ453030
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|213588463|gb|DB957809.1|DB957809
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|213604468|gb|DB979046.1|DB979046
EST:     GGCAGTTAAAGGCAAAGACACTCTTC-CCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: GGCAGTTAAAGGCAAAGACACTC-TCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|192327229|gb|FK019536.1|FK019536
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|151395013|gb|EV264884.1|EV264884
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|17400468|gb|BM177250.1|BM177250
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|207730942|gb|GD705155.1|GD705155
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGC
EST: gi|298175029|gb|HO018024.1|HO018024
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTACTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|298174403|gb|HO014548.1|HO014548
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|10256191|gb|BE823957.1|BE823957
EST:     AGGCAGTTAAAGGCAAAGACACTCTNNTCTTCCACTGCGCNCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|151402760|gb|EV272573.1|EV272573
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGT---                         -T-CGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|42722593|gb|CK768492.1|CK768492
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|192300110|gb|FG991886.1|FG991886
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|192330799|gb|FK021586.1|FK021586
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|13251980|gb|BG362883.1|BG362883
EST:     AGGCAGGTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|254316470|gb|GR828007.1|GR828007
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|298184672|gb|HO029885.1|HO029885
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|209717210|gb|BW657679.1|BW657679
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|151404582|gb|EV274396.1|EV274396
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|213605520|gb|DB970677.1|DB970677
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
EST: gi|298197129|gb|HO041872.1|HO041872
EST:     AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAG                         GTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC
genomic: AGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacc ... tattttgtagGTTCGTGGCCCAACTTGTGCTAGGAGGCTTGTCAATTATCTTGAGGAGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCATTACGCAAGCGACACTTTCTCCGATAACATCTCAAATCTCATTCAGGCAGTTAAAGGCAAAGACACTCTCGTCTTCCACTGCGCTCTAAGTCAGgtcactcacccctttttcaattatttattttacatgttttctgccacttcgatttgtgttattccaattcctgtgattcaatcccgatccatgtgttcgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccct