1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actagtttatactccatataaaatttaaattcgtatgttatatattcaactaagcggcacaataaaaattattaattaatgcgacgcatttggtgtgcagGAGTTGAATCGGTGAACATTGAGGGAGGGAAGGATTTGGTGAGCGTAAAGGGGACGATGGACGTGAAGGAAATAGTACCGTATTTGAACGACAAGTTGAA
species | Glycine max |
transcript | GLYMA19G36800.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATTCGAAAGATTATCCTCAAAAGCAAAG GAGTTGAATCGGTGAACATTGAGGGAGGGAAGGGATTTGGTGAGCGTAAAGEST: gi|193327895|gb|FK295092.1|FK295092
genomic: AGAAGATTCGAAAGATTATCCTCAAAAGCAAAGgttaggcgtg ... tggtgtgcagGAGTTGAATCGGTGAACATTGAGGGAGGGAA-GGATTTGGTGAGCGTAAAG
EST: CTGTGACGGTTGCGTTCAGAAGATTCGAAAGATTATCCTCAAAAGCAAAG GAGTTGAATCGGTGAACATTGAGGGAGGGAAGGATTTGGTGAGCGTAAAGG
genomic: CTGTGACGGTTGCGTTCAGAAGATTCGAAAGATTATCCTCAAAAGCAAAGgttaggcgtg ... tggtgtgcagGAGTTGAATCGGTGAACATTGAGGGAGGGAAGGATTTGGTGAGCGTAAAGG
tcaactaagcggcacaataaaaattattaattaatgcgacgcatttggtgtgcagGAGTTGAATCGGTGAACATTGAGGGAGGGAAGGATTTGGTGAGCGTAAAGGGGACGATGGACGTGAAGGAAATAGTACCGTATTTGAACGACAAGTTGAA
acaataaaaattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagtttatactccatataaaatttaaattcgtatgttatatattcaactaagcggcacaataaaaattattaattaatgcgacgcatttggtgtgcagGAGTTGAATCGGTGAACATTGAGGGAGGGAAGGATTTGGTGAGCGTAAAGGGGACGATGGACGTGAAGGAAATAGTACCGTATTTGAACGACAAGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgacgca