1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatttacttaacactgcaacctagggtttcgatttcatgtaatctatatagtgtttttgggaatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACA
species | Glycine max |
transcript | GLYMA19G36750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGTTGCCCCTEST: gi|193387761|gb|FK350532.1|FK350532
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCC-T
EST: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGEST: gi|193358042|gb|FK319670.1|FK319670
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTG
EST: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCEST: gi|193442973|gb|FK407865.1|FK407865
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
EST: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGEST: gi|193329412|gb|FK296566.1|FK296566
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGG
EST: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGAC GTGGTGATTGAGCTGTTTCTTGGATTGTTGCTT-GTTTT-GGGCTGCCCTC
genomic: GGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACgtaatttact ... aatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTC
caacctagggtttcgatttcatgtaatctatatagtgtttttgggaatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACA
atgtaatctatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttacttaacactgcaacctagggtttcgatttcatgtaatctatatagtgtttttgggaatgatgcagGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA